CHANGES IN VERSION 1.8.7
------------------------ 

BUG FIXES
    * Bug fixed in the aggregation module. The columns of the petpide dataset that have to be imported in the 
    protein dataset were not correct
    
    
    CHANGES IN VERSION 1.7.19
------------------------ 

NEW FEATURES
    * Pre-release version
    
    
    
    CHANGES IN VERSION 1.7.17
------------------------ 

NEW FEATURES
    * The volcanoplots (of the differential analysis) are now interactive 
    since they use the package highcharter
    
    
    
        CHANGES IN VERSION 1.7.13
------------------------ 

NEW FEATURES
    * The normalization function has been modified to take into account the 
    quantile normalization.Only works with Prostar version >= 1.7.13
    
    
    
        CHANGES IN VERSION 1.7.11
------------------------ 

NEW FEATURES
    * During the export to an Excel file, th columns of quantitavie data are formatted as "Number"
    
    
    
    CHANGES IN VERSION 1.7.9
------------------------ 

NEW FEATURES
    * The variance distribution plot has been replaced by the CV distribution plot
    
    
    
        CHANGES IN VERSION 1.7.7
------------------------ 

BUG FIXES
    * The ID of entitiess (peptide or protein) has been added in the first tab in the Excel export file.
    
    
    CHANGES IN VERSION 1.7.5
------------------------ 

BUG FIXES
    * The legend of the x-axis for the boxplots has been modified. With a lot of samples, there was a problem with the margins which were too large to display the plots. Now, the legend appears in one line instead of one line per type of information
    
    
    
    CHANGES IN VERSION 1.7.3
------------------------ 

BUG FIXES
    * A bug in the agregation tool was fixed. It was making errors when the dataset
    contains some missing values.
    
    
    
        CHANGES IN VERSION 1.5.13
------------------------ 

NEW FEATURES
    * In this version, the methods for missing values impuation from the 
    package imp4p have been disabled because they are still under development.
    They will be available later.
    
    
    
CHANGES IN VERSION 1.5.11
------------------------     
BUG FIXES
    * In a plot of the Descriptive Statistics tab (For missing values : 
    mvPerLinesHistoPerCondition).
    When a dataset has conditions with different number of samples, the plot 
    created an error. This bug has been fixed.
    * Conversion of a text file : when the intensity values have a comma when 
    the number is in exponential notation, there was an error.
    This bug has been fixed.
    
    
    CHANGES IN VERSION 1.5.9
------------------------ 

NEW FEATURES
    * The agregation methods have been improved and now take less time

    
CHANGES IN VERSION 1.5.7
------------------------ 

NEW FEATURES
    * Adds support for hierarchical experimental design
    * Integrates the missing values imputation with the imp4p package
    
    
CHANGES IN VERSION 1.5.5
------------------------ 

NEW FEATURES
    * Replacement of XLConnect by the package openxlsx



CHANGES IN VERSION 1.5.3
------------------------ 

NEW FEATURES
    * Violin plots are available in the Descriptive Statistics


CHANGES IN VERSION 1.4.7
------------------------ 

NEW FEATURES
    * In the export tool, when the user chooses the Excel format, the ID is no longer        used to create a new column in the Quantitative Tab. This has no effect on the data.

BUG FIXES
    
    
CHANGES IN VERSION 1.4.6
------------------------ 

NEW FEATURES


BUG FIXES

    * The computation of the number of proteins with only specific peptides,
    shared peptides or a mixture of two has been debugged.



CHANGES IN VERSION 1.3.16
------------------------ 

NEW FEATURES


BUG FIXES

    * The missing values in the result of the aggregation of peptides into protein
      have been replaced by NA. Otherwise, there were errors in the display of the 
      heatmap and the correlation matrix
    * The memory managment in the function mvImage has been optimized


CHANGES IN VERSION 1.3.8
------------------------ 

NEW FEATURES

BUG FIXES

    * Bug fixed in the Xaxis title of the volcanoplot


CHANGES IN VERSION 1.3.6
------------------------ 

NEW FEATURES

BUG FIXES

    * A bug fixed in the mvFilter function



CHANGES IN VERSION 1.3.5
------------------------ 

NEW FEATURES

    * A busy indicator has been added for long time computation plots and functions
    
BUG FIXES


CHANGES IN VERSION 1.3.2
------------------------ 

NEW FEATURES

BUG FIXES

    * in the menu "Dataset available", each line is completed with the type of 
    data (peptide or protein)



CHANGES IN VERSION 1.3.1
------------------------ 

NEW FEATURES
    * To change the current dataset, the user has only to select the desired one in 
    the menu and the entire interface is automatically updated
    * It is possible to modify the gradient of colors for the correlation matrix
    * A new barplot to show the proportion of contaminants and reverse. The 
        computation of these proportions has been debugged
    * adding a function to create new columns in the protein dataset when the 
    peptides dataset has been aggregated
    * A feature to build automatically an ID for the MSnset has been added. It helps 
    the user when he do not know which ID column to choose

BUG FIXES

    * A bug fixed in the dfferential analysis tool when there are several conditions