Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/spammR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: spammR

Version: 0.99.11

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spammR

BuildTime: 3 minutes 40.47 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: spammR_20260116221143

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: spammR. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file spammR/DESCRIPTION ... OK
* preparing spammR:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building lipidProt.Rmd using rmarkdown
trying URL 'https://zenodo.org/records/13345212/files/DESI+spatial%20proteomics%20rat%20brain%20proteomics%20result.xlsx?download=1'
Content type 'application/octet-stream' length 3169373 bytes (3.0 MB)
==================================================
downloaded 3.0 MB


Quitting from lipidProt.Rmd:152-156 [load coords]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `read.table()`:
! no lines available in input
---
Backtrace:
    
 1. utils::read.csv(system.file("extdata", "bcoords.csv", package = "spammR"))
 2.   utils::read.table(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lipidProt.Rmd' failed with diagnostics:
no lines available in input
--- failed re-building lipidProt.Rmd

--- re-building spatMicrobiome.Rmd using rmarkdown
--- finished re-building spatMicrobiome.Rmd

--- re-building spatProt.Rmd using rmarkdown
--- finished re-building spatProt.Rmd

SUMMARY: processing the following file failed:
  lipidProt.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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