Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/spammR
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 24.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

[top]

Package: spammR
Version: 0.99.7
RVersion: 4.6
BiocVersion: 3.23
BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spammR
BuildTime: 3 minutes 33.79 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: spammR_20260116000748
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: spammR. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file spammR/DESCRIPTION ... OK
* preparing spammR:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building lipidProt.Rmd using rmarkdown

Quitting from lipidProt.Rmd:39-78 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `contrib.url()`:
! trying to use CRAN without setting a mirror
---
Backtrace:
    
 1. utils::install.packages("geojsonR")
 2.   base::startsWith(contriburl, "file:")
 3.   utils::contrib.url(repos, type)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lipidProt.Rmd' failed with diagnostics:
trying to use CRAN without setting a mirror
--- failed re-building lipidProt.Rmd

--- re-building spatMicrobiome.Rmd using rmarkdown
--- finished re-building spatMicrobiome.Rmd

--- re-building spatProt.Rmd using rmarkdown
--- finished re-building spatProt.Rmd

SUMMARY: processing the following file failed:
  lipidProt.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

[top]


                				
 

                            
 
                                
                				
nebbiolo1 BUILD BIN output
 
                    			
[top]