Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/spammR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

[top]

Package: spammR

Version: 0.99.3

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spammR

BuildTime: 0 minutes 48.53 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: spammR_20251229193650

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: spammR. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file spammR/DESCRIPTION ... OK
* preparing spammR:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building lipidProt.Rmd using rmarkdown

Quitting from lipidProt.Rmd:39-78 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `contrib.url()`:
! trying to use CRAN without setting a mirror
---
Backtrace:
    
 1. utils::install.packages("geojsonR")
 2.   base::startsWith(contriburl, "file:")
 3.   utils::contrib.url(repos, type)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lipidProt.Rmd' failed with diagnostics:
trying to use CRAN without setting a mirror
--- failed re-building lipidProt.Rmd

--- re-building spatMicrobiome.Rmd using rmarkdown

Quitting from spatMicrobiome.Rmd:70-75 [oneksoils]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://api.figshare.com/v2/file/download/55158824'
---
Backtrace:
    
 1. utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'spatMicrobiome.Rmd' failed with diagnostics:
cannot open URL 'https://api.figshare.com/v2/file/download/55158824'
--- failed re-building spatMicrobiome.Rmd

--- re-building spatProt.Rmd using rmarkdown

Quitting from spatProt.Rmd:76-82 [omics data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://api.figshare.com/v2/file/download/55158821'
---
Backtrace:
    
 1. utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'spatProt.Rmd' failed with diagnostics:
cannot open URL 'https://api.figshare.com/v2/file/download/55158821'
--- failed re-building spatProt.Rmd

SUMMARY: processing the following files failed:
  lipidProt.Rmd spatMicrobiome.Rmd spatProt.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

[top]

nebbiolo1 BUILD BIN output

[top]