Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/scECODA
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 24.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: scECODA
Version: 0.99.0
RVersion: 4.6
BiocVersion: 3.23
BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scECODA
BuildTime: 1 minutes 3.78 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: scECODA_20260302173829
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: scECODA. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file scECODA/DESCRIPTION ... OK
* preparing scECODA:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building scECODA.rmd using rmarkdown

Quitting from scECODA.rmd:204-218 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (is.na(n) || n > 65536L) ...`:
! missing value where TRUE/FALSE needed
---
Backtrace:
    
 1. scECODA::calc_ari(feat_mat, labels)
 2.   stats::hclust(dist_mat, method = "ward.D2")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'scECODA.rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building scECODA.rmd

SUMMARY: processing the following file failed:
  scECODA.rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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