===============================
R CMD BUILD
===============================
* checking for file immApex/DESCRIPTION ... OK
* preparing immApex:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building immApex.Rmd using rmarkdown
trying URL 'https://github.com/pyenv/pyenv-installer/raw/master/bin/pyenv-installer'
Content type 'text/plain; charset=utf-8' length 2827 bytes
==================================================
downloaded 2827 bytes
Cloning into '/media/volume/teran2_disk/pkgbuild/.local/share/r-reticulate/pyenv'...
Cloning into '/media/volume/teran2_disk/pkgbuild/.local/share/r-reticulate/pyenv/plugins/pyenv-doctor'...
Cloning into '/media/volume/teran2_disk/pkgbuild/.local/share/r-reticulate/pyenv/plugins/pyenv-update'...
Cloning into '/media/volume/teran2_disk/pkgbuild/.local/share/r-reticulate/pyenv/plugins/pyenv-virtualenv'...
WARNING: seems you still have not added 'pyenv' to the load path.
# Load pyenv automatically by appending
# the following to
# ~/.bash_profile if it exists, otherwise ~/.profile (for login shells)
# and ~/.bashrc (for interactive shells) :
export PYENV_ROOT="$HOME/.pyenv"
[[ -d $PYENV_ROOT/bin ]] && export PATH="$PYENV_ROOT/bin:$PATH"
eval "$(pyenv init -)"
# Restart your shell for the changes to take effect.
# Load pyenv-virtualenv automatically by adding
# the following to ~/.bashrc:
eval "$(pyenv virtualenv-init -)"
Cloning into '/home/pkgbuild/.pyenv/plugins/pyenv-update'...
Downloading Python-3.10.15.tar.xz...
-> https://www.python.org/ftp/python/3.10.15/Python-3.10.15.tar.xz
Installing Python-3.10.15...
Installed Python-3.10.15 to /home/pkgbuild/.pyenv/versions/3.10.15
Requirement already satisfied: pip in /media/volume/teran2_disk/pkgbuild/.virtualenvs/r-tensorflow/lib/python3.10/site-packages (23.0.1)
Collecting pip
Downloading pip-24.2-py3-none-any.whl (1.8 MB)
1.8/1.8 MB 27.4 MB/s eta 0:00:00
Collecting wheel
Downloading wheel-0.44.0-py3-none-any.whl (67 kB)
67.1/67.1 kB 10.3 MB/s eta 0:00:00
Requirement already satisfied: setuptools in /media/volume/teran2_disk/pkgbuild/.virtualenvs/r-tensorflow/lib/python3.10/site-packages (65.5.0)
Collecting setuptools
Downloading setuptools-75.2.0-py3-none-any.whl (1.2 MB)
1.2/1.2 MB 69.7 MB/s eta 0:00:00
Installing collected packages: wheel, setuptools, pip
Attempting uninstall: setuptools
Found existing installation: setuptools 65.5.0
Uninstalling setuptools-65.5.0:
Successfully uninstalled setuptools-65.5.0
Attempting uninstall: pip
Found existing installation: pip 23.0.1
Uninstalling pip-23.0.1:
Successfully uninstalled pip-23.0.1
Successfully installed pip-24.2 setuptools-75.2.0 wheel-0.44.0
WARNING: There was an error checking the latest version of pip.
Collecting tensorflow==2.15.*
Downloading tensorflow-2.15.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.2 kB)
Collecting tensorflow-hub
Downloading tensorflow_hub-0.16.1-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting tensorflow-datasets
Downloading tensorflow_datasets-4.9.6-py3-none-any.whl.metadata (9.5 kB)
Collecting scipy
Downloading scipy-1.14.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
Collecting requests
Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
Collecting Pillow
Downloading pillow-11.0.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
Collecting h5py
Downloading h5py-3.12.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB)
Collecting pandas
Downloading pandas-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
Collecting pydot
Downloading pydot-3.0.2-py3-none-any.whl.metadata (10 kB)
Collecting absl-py>=1.0.0 (from tensorflow==2.15.*)
Downloading absl_py-2.1.0-py3-none-any.whl.metadata (2.3 kB)
Collecting astunparse>=1.6.0 (from tensorflow==2.15.*)
Downloading astunparse-1.6.3-py2.py3-none-any.whl.metadata (4.4 kB)
Collecting flatbuffers>=23.5.26 (from tensorflow==2.15.*)
Downloading flatbuffers-24.3.25-py2.py3-none-any.whl.metadata (850 bytes)
Collecting gast!=0.5.0,!=0.5.1,!=0.5.2,>=0.2.1 (from tensorflow==2.15.*)
Downloading gast-0.6.0-py3-none-any.whl.metadata (1.3 kB)
Collecting google-pasta>=0.1.1 (from tensorflow==2.15.*)
Downloading google_pasta-0.2.0-py3-none-any.whl.metadata (814 bytes)
Collecting libclang>=13.0.0 (from tensorflow==2.15.*)
Downloading libclang-18.1.1-py2.py3-none-manylinux2010_x86_64.whl.metadata (5.2 kB)
Collecting ml-dtypes~=0.3.1 (from tensorflow==2.15.*)
Downloading ml_dtypes-0.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (20 kB)
Collecting numpy<2.0.0,>=1.23.5 (from tensorflow==2.15.*)
Downloading numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
Collecting opt-einsum>=2.3.2 (from tensorflow==2.15.*)
Downloading opt_einsum-3.4.0-py3-none-any.whl.metadata (6.3 kB)
Collecting packaging (from tensorflow==2.15.*)
Downloading packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
Collecting protobuf!=4.21.0,!=4.21.1,!=4.21.2,!=4.21.3,!=4.21.4,!=4.21.5,<5.0.0dev,>=3.20.3 (from tensorflow==2.15.*)
Downloading protobuf-4.25.5-cp37-abi3-manylinux2014_x86_64.whl.metadata (541 bytes)
Requirement already satisfied: setuptools in /media/volume/teran2_disk/pkgbuild/.virtualenvs/r-tensorflow/lib/python3.10/site-packages (from tensorflow==2.15.*) (75.2.0)
Collecting six>=1.12.0 (from tensorflow==2.15.*)
Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting termcolor>=1.1.0 (from tensorflow==2.15.*)
Downloading termcolor-2.5.0-py3-none-any.whl.metadata (6.1 kB)
Collecting typing-extensions>=3.6.6 (from tensorflow==2.15.*)
Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Collecting wrapt<1.15,>=1.11.0 (from tensorflow==2.15.*)
Downloading wrapt-1.14.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.7 kB)
Collecting tensorflow-io-gcs-filesystem>=0.23.1 (from tensorflow==2.15.*)
Downloading tensorflow_io_gcs_filesystem-0.37.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB)
Collecting grpcio<2.0,>=1.24.3 (from tensorflow==2.15.*)
Downloading grpcio-1.67.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.9 kB)
Collecting tensorboard<2.16,>=2.15 (from tensorflow==2.15.*)
Downloading tensorboard-2.15.2-py3-none-any.whl.metadata (1.7 kB)
Collecting tensorflow-estimator<2.16,>=2.15.0 (from tensorflow==2.15.*)
Downloading tensorflow_estimator-2.15.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting keras<2.16,>=2.15.0 (from tensorflow==2.15.*)
Downloading keras-2.15.0-py3-none-any.whl.metadata (2.4 kB)
Collecting tf-keras>=2.14.1 (from tensorflow-hub)
Downloading tf_keras-2.17.0-py3-none-any.whl.metadata (1.6 kB)
Collecting click (from tensorflow-datasets)
Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
Collecting dm-tree (from tensorflow-datasets)
Downloading dm_tree-0.1.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.9 kB)
Collecting immutabledict (from tensorflow-datasets)
Downloading immutabledict-4.2.0-py3-none-any.whl.metadata (3.4 kB)
Collecting promise (from tensorflow-datasets)
Downloading promise-2.3.tar.gz (19 kB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Collecting psutil (from tensorflow-datasets)
Downloading psutil-6.0.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB)
Collecting pyarrow (from tensorflow-datasets)
Downloading pyarrow-17.0.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
Collecting simple-parsing (from tensorflow-datasets)
Downloading simple_parsing-0.1.6-py3-none-any.whl.metadata (7.3 kB)
Collecting tensorflow-metadata (from tensorflow-datasets)
Downloading tensorflow_metadata-1.16.1-py3-none-any.whl.metadata (2.4 kB)
Collecting toml (from tensorflow-datasets)
Downloading toml-0.10.2-py2.py3-none-any.whl.metadata (7.1 kB)
Collecting tqdm (from tensorflow-datasets)
Downloading tqdm-4.66.5-py3-none-any.whl.metadata (57 kB)
Collecting array-record>=0.5.0 (from tensorflow-datasets)
Downloading array_record-0.5.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (699 bytes)
Collecting etils>=1.6.0 (from etils[enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
Downloading etils-1.10.0-py3-none-any.whl.metadata (6.5 kB)
Collecting charset-normalizer<4,>=2 (from requests)
Downloading charset_normalizer-3.4.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB)
Collecting idna<4,>=2.5 (from requests)
Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
Collecting urllib3<3,>=1.21.1 (from requests)
Using cached urllib3-2.2.3-py3-none-any.whl.metadata (6.5 kB)
Collecting certifi>=2017.4.17 (from requests)
Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
Collecting python-dateutil>=2.8.2 (from pandas)
Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting pytz>=2020.1 (from pandas)
Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
Collecting tzdata>=2022.7 (from pandas)
Downloading tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting pyparsing>=3.0.9 (from pydot)
Downloading pyparsing-3.2.0-py3-none-any.whl.metadata (5.0 kB)
Requirement already satisfied: wheel<1.0,>=0.23.0 in /media/volume/teran2_disk/pkgbuild/.virtualenvs/r-tensorflow/lib/python3.10/site-packages (from astunparse>=1.6.0->tensorflow==2.15.*) (0.44.0)
Collecting fsspec (from etils[enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
Downloading fsspec-2024.9.0-py3-none-any.whl.metadata (11 kB)
Collecting importlib_resources (from etils[enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
Downloading importlib_resources-6.4.5-py3-none-any.whl.metadata (4.0 kB)
Collecting zipp (from etils[enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
Downloading zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
Collecting google-auth<3,>=1.6.3 (from tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading google_auth-2.35.0-py2.py3-none-any.whl.metadata (4.7 kB)
Collecting google-auth-oauthlib<2,>=0.5 (from tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading google_auth_oauthlib-1.2.1-py2.py3-none-any.whl.metadata (2.7 kB)
Collecting markdown>=2.6.8 (from tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
Collecting tensorboard-data-server<0.8.0,>=0.7.0 (from tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading tensorboard_data_server-0.7.2-py3-none-manylinux_2_31_x86_64.whl.metadata (1.1 kB)
Collecting werkzeug>=1.0.1 (from tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading werkzeug-3.0.4-py3-none-any.whl.metadata (3.7 kB)
INFO: pip is looking at multiple versions of tf-keras to determine which version is compatible with other requirements. This could take a while.
Collecting tf-keras>=2.14.1 (from tensorflow-hub)
Downloading tf_keras-2.16.0-py3-none-any.whl.metadata (1.6 kB)
Downloading tf_keras-2.15.1-py3-none-any.whl.metadata (1.7 kB)
Collecting docstring-parser<1.0,>=0.15 (from simple-parsing->tensorflow-datasets)
Downloading docstring_parser-0.16-py3-none-any.whl.metadata (3.0 kB)
Collecting protobuf!=4.21.0,!=4.21.1,!=4.21.2,!=4.21.3,!=4.21.4,!=4.21.5,<5.0.0dev,>=3.20.3 (from tensorflow==2.15.*)
Downloading protobuf-3.20.3-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (679 bytes)
Collecting cachetools<6.0,>=2.0.0 (from google-auth<3,>=1.6.3->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading cachetools-5.5.0-py3-none-any.whl.metadata (5.3 kB)
Collecting pyasn1-modules>=0.2.1 (from google-auth<3,>=1.6.3->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading pyasn1_modules-0.4.1-py3-none-any.whl.metadata (3.5 kB)
Collecting rsa<5,>=3.1.4 (from google-auth<3,>=1.6.3->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading rsa-4.9-py3-none-any.whl.metadata (4.2 kB)
Collecting requests-oauthlib>=0.7.0 (from google-auth-oauthlib<2,>=0.5->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading requests_oauthlib-2.0.0-py2.py3-none-any.whl.metadata (11 kB)
Collecting MarkupSafe>=2.1.1 (from werkzeug>=1.0.1->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading MarkupSafe-3.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
Collecting pyasn1<0.7.0,>=0.4.6 (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Using cached pyasn1-0.6.1-py3-none-any.whl.metadata (8.4 kB)
Collecting oauthlib>=3.0.0 (from requests-oauthlib>=0.7.0->google-auth-oauthlib<2,>=0.5->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
Downloading oauthlib-3.2.2-py3-none-any.whl.metadata (7.5 kB)
Downloading tensorflow-2.15.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (475.2 MB)
475.2/475.2 MB 146.7 MB/s eta 0:00:00
Downloading tensorflow_hub-0.16.1-py2.py3-none-any.whl (30 kB)
Downloading tensorflow_datasets-4.9.6-py3-none-any.whl (5.1 MB)
5.1/5.1 MB 120.3 MB/s eta 0:00:00
Downloading scipy-1.14.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (41.2 MB)
41.2/41.2 MB 211.1 MB/s eta 0:00:00
Using cached requests-2.32.3-py3-none-any.whl (64 kB)
Downloading pillow-11.0.0-cp310-cp310-manylinux_2_28_x86_64.whl (4.4 MB)
4.4/4.4 MB 112.1 MB/s eta 0:00:00
Downloading h5py-3.12.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.3 MB)
5.3/5.3 MB 102.3 MB/s eta 0:00:00
Downloading pandas-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
13.1/13.1 MB 166.9 MB/s eta 0:00:00
Downloading pydot-3.0.2-py3-none-any.whl (35 kB)
Downloading absl_py-2.1.0-py3-none-any.whl (133 kB)
Downloading array_record-0.5.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.2 MB)
2.2/2.2 MB 70.3 MB/s eta 0:00:00
Downloading astunparse-1.6.3-py2.py3-none-any.whl (12 kB)
Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
Downloading charset_normalizer-3.4.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB)
Downloading etils-1.10.0-py3-none-any.whl (164 kB)
Downloading flatbuffers-24.3.25-py2.py3-none-any.whl (26 kB)
Downloading gast-0.6.0-py3-none-any.whl (21 kB)
Downloading google_pasta-0.2.0-py3-none-any.whl (57 kB)
Downloading grpcio-1.67.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.9 MB)
5.9/5.9 MB 130.4 MB/s eta 0:00:00
Using cached idna-3.10-py3-none-any.whl (70 kB)
Downloading keras-2.15.0-py3-none-any.whl (1.7 MB)
1.7/1.7 MB 69.9 MB/s eta 0:00:00
Downloading libclang-18.1.1-py2.py3-none-manylinux2010_x86_64.whl (24.5 MB)
24.5/24.5 MB 143.7 MB/s eta 0:00:00
Downloading ml_dtypes-0.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.2 MB)
2.2/2.2 MB 88.9 MB/s eta 0:00:00
Downloading numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
18.2/18.2 MB 167.9 MB/s eta 0:00:00
Downloading opt_einsum-3.4.0-py3-none-any.whl (71 kB)
Downloading pyparsing-3.2.0-py3-none-any.whl (106 kB)
Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Downloading tensorboard-2.15.2-py3-none-any.whl (5.5 MB)
5.5/5.5 MB 118.6 MB/s eta 0:00:00
Downloading tensorflow_estimator-2.15.0-py2.py3-none-any.whl (441 kB)
Downloading tensorflow_io_gcs_filesystem-0.37.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.1 MB)
5.1/5.1 MB 109.9 MB/s eta 0:00:00
Downloading termcolor-2.5.0-py3-none-any.whl (7.8 kB)
Downloading tf_keras-2.15.1-py3-none-any.whl (1.7 MB)
1.7/1.7 MB 65.3 MB/s eta 0:00:00
Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Downloading tzdata-2024.2-py2.py3-none-any.whl (346 kB)
Using cached urllib3-2.2.3-py3-none-any.whl (126 kB)
Downloading wrapt-1.14.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (77 kB)
Downloading click-8.1.7-py3-none-any.whl (97 kB)
Downloading dm_tree-0.1.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (152 kB)
Downloading immutabledict-4.2.0-py3-none-any.whl (4.7 kB)
Downloading packaging-24.1-py3-none-any.whl (53 kB)
Downloading psutil-6.0.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (290 kB)
Downloading pyarrow-17.0.0-cp310-cp310-manylinux_2_28_x86_64.whl (39.9 MB)
39.9/39.9 MB 146.4 MB/s eta 0:00:00
Downloading simple_parsing-0.1.6-py3-none-any.whl (112 kB)
Downloading tensorflow_metadata-1.16.1-py3-none-any.whl (28 kB)
Downloading protobuf-3.20.3-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.1 MB)
1.1/1.1 MB 42.1 MB/s eta 0:00:00
Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB)
Downloading tqdm-4.66.5-py3-none-any.whl (78 kB)
Downloading docstring_parser-0.16-py3-none-any.whl (36 kB)
Downloading google_auth-2.35.0-py2.py3-none-any.whl (208 kB)
Downloading google_auth_oauthlib-1.2.1-py2.py3-none-any.whl (24 kB)
Downloading Markdown-3.7-py3-none-any.whl (106 kB)
Downloading tensorboard_data_server-0.7.2-py3-none-manylinux_2_31_x86_64.whl (6.6 MB)
6.6/6.6 MB 154.9 MB/s eta 0:00:00
Downloading werkzeug-3.0.4-py3-none-any.whl (227 kB)
Downloading fsspec-2024.9.0-py3-none-any.whl (179 kB)
Downloading importlib_resources-6.4.5-py3-none-any.whl (36 kB)
Downloading zipp-3.20.2-py3-none-any.whl (9.2 kB)
Downloading cachetools-5.5.0-py3-none-any.whl (9.5 kB)
Downloading MarkupSafe-3.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
Downloading pyasn1_modules-0.4.1-py3-none-any.whl (181 kB)
Downloading requests_oauthlib-2.0.0-py2.py3-none-any.whl (24 kB)
Downloading rsa-4.9-py3-none-any.whl (34 kB)
Downloading oauthlib-3.2.2-py3-none-any.whl (151 kB)
Using cached pyasn1-0.6.1-py3-none-any.whl (83 kB)
Building wheels for collected packages: promise
Building wheel for promise (setup.py): started
Building wheel for promise (setup.py): finished with status 'done'
Created wheel for promise: filename=promise-2.3-py3-none-any.whl size=21482 sha256=2ff8668cefb77ac878a9f3805e84e255b094960e706ba32987f4d56d50f080bf
Stored in directory: /media/volume/teran2_disk/pkgbuild/.cache/pip/wheels/54/4e/28/3ed0e1c8a752867445bab994d2340724928aa3ab059c57c8db
Successfully built promise
Installing collected packages: pytz, libclang, flatbuffers, dm-tree, zipp, wrapt, urllib3, tzdata, typing-extensions, tqdm, toml, termcolor, tensorflow-io-gcs-filesystem, tensorflow-estimator, tensorboard-data-server, six, pyparsing, pyasn1, psutil, protobuf, Pillow, packaging, opt-einsum, oauthlib, numpy, MarkupSafe, markdown, keras, importlib_resources, immutabledict, idna, grpcio, gast, fsspec, etils, docstring-parser, click, charset-normalizer, certifi, cachetools, absl-py, werkzeug, tensorflow-metadata, simple-parsing, scipy, rsa, requests, python-dateutil, pydot, pyasn1-modules, pyarrow, promise, ml-dtypes, h5py, google-pasta, astunparse, requests-oauthlib, pandas, google-auth, google-auth-oauthlib, array-record, tensorboard, tensorflow-datasets, tensorflow, tf-keras, tensorflow-hub
Successfully installed MarkupSafe-3.0.1 Pillow-11.0.0 absl-py-2.1.0 array-record-0.5.1 astunparse-1.6.3 cachetools-5.5.0 certifi-2024.8.30 charset-normalizer-3.4.0 click-8.1.7 dm-tree-0.1.8 docstring-parser-0.16 etils-1.10.0 flatbuffers-24.3.25 fsspec-2024.9.0 gast-0.6.0 google-auth-2.35.0 google-auth-oauthlib-1.2.1 google-pasta-0.2.0 grpcio-1.67.0 h5py-3.12.1 idna-3.10 immutabledict-4.2.0 importlib_resources-6.4.5 keras-2.15.0 libclang-18.1.1 markdown-3.7 ml-dtypes-0.3.2 numpy-1.26.4 oauthlib-3.2.2 opt-einsum-3.4.0 packaging-24.1 pandas-2.2.3 promise-2.3 protobuf-3.20.3 psutil-6.0.0 pyarrow-17.0.0 pyasn1-0.6.1 pyasn1-modules-0.4.1 pydot-3.0.2 pyparsing-3.2.0 python-dateutil-2.9.0.post0 pytz-2024.2 requests-2.32.3 requests-oauthlib-2.0.0 rsa-4.9 scipy-1.14.1 simple-parsing-0.1.6 six-1.16.0 tensorboard-2.15.2 tensorboard-data-server-0.7.2 tensorflow-2.15.1 tensorflow-datasets-4.9.6 tensorflow-estimator-2.15.0 tensorflow-hub-0.16.1 tensorflow-io-gcs-filesystem-0.37.1 tensorflow-metadata-1.16.1 termcolor-2.5.0 tf-keras-2.15.1 toml-0.10.2 tqdm-4.66.5 typing-extensions-4.12.2 tzdata-2024.2 urllib3-2.2.3 werkzeug-3.0.4 wrapt-1.14.1 zipp-3.20.2
Quitting from lines 107-115 [unnamed-chunk-5] (immApex.Rmd)
Error: processing vignette 'immApex.Rmd' failed with diagnostics:
Valid installation of TensorFlow not found.
Python environments searched for 'tensorflow' package:
/usr/bin/python3.12
Python exception encountered:
Traceback (most recent call last):
File "/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
^^^^^^^^^^^^^^^^^^^^^^
File "/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
^^^^^^
File "/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'tensorflow'
You can install TensorFlow using the install_tensorflow() function.
--- failed re-building immApex.Rmd
SUMMARY: processing the following file failed:
immApex.Rmd
Error: Vignette re-building failed.
Execution halted