## ----include = FALSE----------------------------------------------------------
knitr::opts_chunk$set(
    collapse = TRUE,
    comment = "#>", fig.align = "center"
)

## ----eval=FALSE---------------------------------------------------------------
#  if (!requireNamespace("BiocManager", quietly=TRUE))
#      install.packages("BiocManager")
#  
#  #BiocManager::install("concordexR", version="devel")
#  devtools::install_github("pachterlab/concordexR")

## ----example------------------------------------------------------------------
library(concordexR)
library(SFEData)

sfe <- McKellarMuscleData("small")

## -----------------------------------------------------------------------------
res <- calculateConcordex(sfe, labels=colData(sfe)[["in_tissue"]])

## -----------------------------------------------------------------------------
sessionInfo()