Package: toppgene
Title: Gene List Enrichment Analysis using the ToppGene Suite
Version: 1.0.1
Authors@R: c(
    person("Pariksheet Nanda",
           email = "pan79@pitt.edu",
           role = c("aut", "cre"),
	   comment = c(ORCID = "0000-0001-9726-4552")),
    person("Jason Shoemaker",
           email = "jason.shoemaker@pitt.edu",
	   role = "fnd",
	   comment = c(ORCID = "0000-0003-3315-7103")))
Description: The ToppGene Suite is a one-stop portal for gene list enrichment
    analysis and candidate gene prioritization based on functional annotations
    and protein interactions network.  Although the ToppCluster web application
    provides convenient graphical access to the ToppGene Suite, the OpenAPI 3.0
    compliant interface of ToppGene is better suited for automation and
    reproducibility.  This package includes Bioconductor class interfaces and
    biological examples.
BiocType: Software
biocViews: Clustering, GeneExpression, GeneSetEnrichment, Genetics,
        MotifDiscovery, Network, NetworkEnrichment, Pathways,
        Pharmacogenetics, Proteomics, Software, ThirdPartyClient
URL: https://github.com/ImmuSystems-lab/toppgene
BugReports: https://github.com/ImmuSystems-lab/toppgene/issues
Depends: R (>= 4.6.0)
Encoding: UTF-8
License: GPL (>= 3)
Imports: BiocFileCache, httr2, IRanges, jsonlite, methods, purrr,
        readr, S4Vectors, xml2, yaml
Suggests: BiocStyle, DFplyr (>= 1.5.0), knitr, rmarkdown, testthat (>=
        3.0.0)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/testthat/parallel: true
git_url: https://git.bioconductor.org/packages/toppgene
git_branch: RELEASE_3_23
git_last_commit: 328650a
git_last_commit_date: 2026-04-30
Repository: Bioconductor 3.23
Date/Publication: 2026-04-30
NeedsCompilation: no
Packaged: 2026-05-01 00:51:24 UTC; biocbuild
Author: Pariksheet Nanda [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9726-4552>),
  Jason Shoemaker [fnd] (ORCID: <https://orcid.org/0000-0003-3315-7103>)
Maintainer: Pariksheet Nanda <pan79@pitt.edu>
