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Index of /bioconductor/packages/release/bioc/src/contrib/

File Name  ↓ File Size  ↓ Date  ↓ 
Parent directory/--
Archive/-2026-05-08 16:00:06
Meta/-2025-10-25 14:58:57
SwathXtend_2.34.0.tar.gz346.5 MiB2026-04-29 13:50:57
easyRNASeq_2.48.0.tar.gz69.6 MiB2026-04-29 13:50:24
TCGAbiolinks_2.40.0.tar.gz63.8 MiB2026-04-29 13:50:58
BaalChIP_1.38.0.tar.gz45.2 MiB2026-04-30 16:00:09
ELMER_2.35.1.tar.gz43.6 MiB2026-02-05 17:00:03
ldblock_1.42.0.tar.gz40.1 MiB2026-04-29 13:50:35
sangeranalyseR_1.22.0.tar.gz38.2 MiB2026-04-29 13:50:49
EventPointer_3.20.0.tar.gz36.6 MiB2026-04-29 13:50:25
cghMCR_1.70.0.tar.gz36.1 MiB2026-04-29 13:50:17
gwascat_2.44.0.tar.gz34.0 MiB2026-04-29 13:50:30
spatialHeatmap_2.18.1.tar.gz33.9 MiB2026-05-07 16:00:09
BiocSklearn_1.34.0.tar.gz32.5 MiB2026-04-29 13:50:15
canceR_1.46.0.tar.gz31.5 MiB2026-04-29 13:50:16
RbowtieCuda_1.4.1.tar.gz27.9 MiB2026-05-08 00:15:02
gmapR_1.54.0.tar.gz27.9 MiB2026-04-29 13:50:29
FitHiC_1.38.0.tar.gz27.7 MiB2026-04-29 13:50:26
oligo_1.76.0.tar.gz27.1 MiB2026-04-29 13:50:42
banocc_1.36.0.tar.gz26.0 MiB2026-04-30 16:00:09
iSEE_2.24.0.tar.gz25.6 MiB2026-04-29 13:50:33
ChIPpeakAnno_3.46.0.tar.gz21.5 MiB2026-04-29 13:50:18
ggcyto_1.40.0.tar.gz21.4 MiB2026-04-29 13:50:29
cytomapper_1.24.0.tar.gz21.0 MiB2026-04-29 13:50:21
vtpnet_0.52.0.tar.gz20.2 MiB2026-04-29 13:51:01
SmartPhos_1.2.0.tar.gz20.2 MiB2026-04-29 13:50:53
ENmix_1.48.0.tar.gz20.1 MiB2026-04-29 13:50:24
CoGAPS_3.32.0.tar.gz19.8 MiB2026-04-29 13:50:19
DEGreport_1.48.0.tar.gz19.6 MiB2026-04-29 13:50:22
mixOmics_6.36.0.tar.gz19.1 MiB2026-04-29 13:50:39
SIAMCAT_2.16.0.tar.gz18.8 MiB2026-04-29 13:50:52
knowYourCG_1.8.0.tar.gz18.7 MiB2026-04-29 13:50:34
debrowser_1.40.0.tar.gz18.2 MiB2026-04-29 13:50:21
DECIPHER_3.8.0.tar.gz17.8 MiB2026-04-29 13:50:22
slalom_1.34.0.tar.gz17.6 MiB2026-04-29 13:50:53
iClusterPlus_1.48.0.tar.gz16.5 MiB2026-04-29 13:50:32
sesame_1.30.0.tar.gz16.3 MiB2026-04-29 13:50:51
GeomxTools_3.16.0.tar.gz15.6 MiB2026-04-29 13:50:29
MoleculeExperiment_1.12.0.tar.gz15.6 MiB2026-04-29 13:50:39
ivygapSE_1.34.0.tar.gz15.4 MiB2026-04-29 13:50:33
msgbsR_1.36.0.tar.gz15.2 MiB2026-04-29 13:50:40
MoonlightR_1.38.0.tar.gz14.8 MiB2026-04-29 13:50:39
EGAD_1.40.0.tar.gz14.6 MiB2026-04-29 13:50:24
ATACseqQC_1.36.0.tar.gz14.5 MiB2026-04-29 13:50:14
spiky_1.18.0.tar.gz14.3 MiB2026-04-29 13:50:54
ontoProc_2.6.0.tar.gz13.8 MiB2026-04-30 16:00:09
epiSeeker_1.0.0.tar.gz13.4 MiB2026-04-29 13:50:25
oposSOM_2.30.0.tar.gz13.3 MiB2026-04-29 13:50:42
NanoMethViz_3.8.0.tar.gz13.3 MiB2026-04-29 13:50:41
Rsubread_2.26.0.tar.gz13.0 MiB2026-04-29 13:50:48
VISTA_1.0.0.tar.gz12.9 MiB2026-04-29 13:51:00
GEOquery_2.80.0.tar.gz12.8 MiB2026-04-29 13:50:29
chevreulPlot_1.4.0.tar.gz12.8 MiB2026-04-29 13:50:18
arrayQuality_1.90.0.tar.gz12.8 MiB2026-04-29 13:50:13
scPipe_2.12.0.tar.gz12.6 MiB2026-04-29 13:50:50
RiboCrypt_1.18.0.tar.gz12.3 MiB2026-04-29 13:50:47
M3Drop_1.38.0.tar.gz12.2 MiB2026-04-29 13:50:36
Biostrings_2.80.0.tar.gz12.2 MiB2026-04-29 13:50:15
clusterExperiment_2.32.0.tar.gz11.9 MiB2026-04-29 13:50:19
maftools_2.28.0.tar.gz11.9 MiB2026-04-29 13:50:36
lpsymphony_1.40.0.tar.gz11.9 MiB2026-04-29 13:50:35
CRISPRseek_1.52.0.tar.gz11.8 MiB2026-04-29 13:50:20
transomics2cytoscape_1.22.0.tar.gz11.8 MiB2026-04-29 13:50:59
geneXtendeR_1.37.0.tar.gz11.7 MiB2025-11-05 17:00:04
RnBeads_2.30.0.tar.gz11.5 MiB2026-04-29 13:50:48
Coralysis_1.2.0.tar.gz11.5 MiB2026-04-29 13:50:20
dandelionR_1.4.0.tar.gz11.4 MiB2026-04-29 13:50:21
goatea_2.0.0.tar.gz11.4 MiB2026-04-29 13:50:30
msPurity_1.38.0.tar.gz11.3 MiB2026-04-29 13:50:40
CATALYST_1.36.0.tar.gz11.2 MiB2026-04-29 13:50:16
DTA_2.58.0.tar.gz11.2 MiB2026-04-29 13:50:23
PCAtools_2.24.0.tar.gz11.2 MiB2026-04-29 13:50:43
Glimma_2.21.0.tar.gz11.1 MiB2025-11-04 17:00:04
DeMixT_2.0.0.tar.gz11.1 MiB2026-04-29 13:50:22
flowStats_4.24.0.tar.gz11.0 MiB2026-04-29 13:50:27
pRoloc_1.52.0.tar.gz10.8 MiB2026-04-29 13:50:45
MSstatsQC_2.30.0.tar.gz10.8 MiB2026-04-29 13:50:40
QuaternaryProd_1.46.0.tar.gz10.8 MiB2026-04-29 13:50:45
pcaExplorer_3.6.0.tar.gz10.7 MiB2026-04-29 13:50:43
trackViewer_1.48.0.tar.gz10.6 MiB2026-04-29 13:50:59
metabom8_1.0.0.tar.gz10.6 MiB2026-04-29 13:50:37
iModMix_1.2.0.tar.gz10.5 MiB2026-04-29 13:50:32
rWikiPathways_1.32.0.tar.gz10.4 MiB2026-04-29 13:50:48
scTensor_2.22.0.tar.gz10.3 MiB2026-04-29 13:50:51
RTN_2.36.0.tar.gz10.3 MiB2026-04-29 13:50:48
progeny_1.34.0.tar.gz10.1 MiB2026-04-29 13:50:45
Aerith_1.0.1.tar.gz10.0 MiB2026-05-02 16:00:09
ACME_2.68.0.tar.gz9.9 MiB2026-04-29 13:50:12
esATAC_1.34.0.tar.gz9.9 MiB2026-04-29 13:50:25
SpaNorm_1.6.0.tar.gz9.8 MiB2026-04-29 13:50:53
qusage_2.46.0.tar.gz9.6 MiB2026-04-29 13:50:45
GeneTonic_3.6.0.tar.gz9.6 MiB2026-04-29 13:50:28
OCplus_1.86.0.tar.gz9.6 MiB2026-04-29 13:50:42
CNEr_1.48.0.tar.gz9.6 MiB2026-04-29 13:50:19
phantasus_1.32.0.tar.gz9.6 MiB2026-04-29 13:50:43
signifinder_1.13.0.tar.gz9.5 MiB2025-11-05 17:00:05
weitrix_1.24.0.tar.gz9.5 MiB2026-04-29 13:51:01
bioCancer_1.40.0.tar.gz9.5 MiB2026-04-29 13:50:14
imcRtools_1.18.0.tar.gz9.5 MiB2026-04-29 13:50:32
EnhancedVolcano_1.30.0.tar.gz9.4 MiB2026-04-29 13:50:24
MSstatsResponse_1.2.0.tar.gz9.4 MiB2026-04-29 13:50:40
MethPed_1.40.0.tar.gz9.3 MiB2026-04-29 13:50:37
GRaNIE_1.16.0.tar.gz9.3 MiB2026-04-29 13:50:30
cytoviewer_1.12.0.tar.gz9.3 MiB2026-04-29 13:50:21
Statial_1.14.0.tar.gz9.2 MiB2026-04-29 13:50:55
xcms_4.10.0.tar.gz9.1 MiB2026-04-30 16:00:09
PRONE_1.6.0.tar.gz9.1 MiB2026-04-29 13:50:45
monocle_2.40.0.tar.gz9.0 MiB2026-04-29 13:50:39
SPONGE_1.34.0.tar.gz8.9 MiB2026-04-29 13:50:54
IntramiRExploreR_1.34.0.tar.gz8.9 MiB2026-04-29 13:50:33
acde_1.42.0.tar.gz8.9 MiB2026-04-29 13:50:12
amplican_1.34.0.tar.gz8.8 MiB2026-04-29 13:50:13
ISAnalytics_1.22.0.tar.gz8.8 MiB2026-04-29 13:50:33
postNet_1.0.0.tar.gz8.7 MiB2026-04-29 13:50:44
pandaR_1.44.0.tar.gz8.7 MiB2026-04-29 13:50:43
BioTIP_1.26.0.tar.gz8.6 MiB2026-04-29 13:50:15
ViSEAGO_1.26.0.tar.gz8.6 MiB2026-04-29 13:51:00
blase_1.2.0.tar.gz8.6 MiB2026-04-29 13:50:15
igvR_1.32.0.tar.gz8.6 MiB2026-04-29 13:50:32
methylMnM_1.50.0.tar.gz8.5 MiB2026-04-29 13:50:38
scp_1.22.0.tar.gz8.5 MiB2026-04-29 13:50:50
VaSP_1.24.0.tar.gz8.5 MiB2026-04-29 13:51:00
TPP_3.40.0.tar.gz8.4 MiB2026-04-29 13:50:59
OncoSimulR_4.14.0.tar.gz8.4 MiB2026-04-29 13:50:42
heatmaps_1.36.0.tar.gz8.3 MiB2026-04-29 13:50:31
KnowSeq_1.25.0.tar.gz8.2 MiB2025-11-01 16:00:05
scRepertoire_2.8.0.tar.gz8.1 MiB2026-04-29 13:50:50
rexposome_1.34.1.tar.gz8.1 MiB2026-05-08 16:00:05
CytoML_2.24.0.tar.gz8.1 MiB2026-04-29 13:50:21
lumi_2.64.0.tar.gz8.0 MiB2026-04-29 13:50:35
scafari_1.2.0.tar.gz8.0 MiB2026-04-29 13:50:49
affycomp_1.88.0.tar.gz8.0 MiB2026-04-29 13:50:12
HDF5Array_1.40.0.tar.gz8.0 MiB2026-04-29 13:50:31
ChAMP_2.42.0.tar.gz7.9 MiB2026-04-29 13:50:18
vidger_1.32.0.tar.gz7.9 MiB2026-04-29 13:51:00
INSPEcT_1.42.0.tar.gz7.7 MiB2026-04-29 13:50:33
snpStats_1.62.0.tar.gz7.7 MiB2026-04-29 13:50:53
SpaceTrooper_1.2.0.tar.gz7.7 MiB2026-04-29 13:50:53
systemPipeR_2.18.0.tar.gz7.7 MiB2026-04-29 13:50:57
CRImage_1.60.0.tar.gz7.7 MiB2026-04-29 13:50:20
MSnbase_2.37.0.tar.gz7.6 MiB2025-11-01 16:00:06
flowCut_1.22.0.tar.gz7.6 MiB2026-04-29 13:50:26
alevinQC_1.28.0.tar.gz7.6 MiB2026-04-29 13:50:13
iSEEtree_1.6.0.tar.gz7.5 MiB2026-04-29 13:50:33
GeneRegionScan_1.68.0.tar.gz7.5 MiB2026-04-29 13:50:28
scDataviz_1.22.0.tar.gz7.5 MiB2026-04-29 13:50:49
chevreulShiny_1.4.0.tar.gz7.5 MiB2026-04-29 13:50:18
flowCore_2.24.0.tar.gz7.5 MiB2026-04-29 13:50:26
PhosR_1.22.0.tar.gz7.4 MiB2026-04-29 13:50:43
muscat_1.26.0.tar.gz7.4 MiB2026-04-29 13:50:41
GeneNetworkBuilder_1.54.0.tar.gz7.4 MiB2026-04-29 13:50:28
SPIAT_1.14.0.tar.gz7.4 MiB2026-04-29 13:50:54
mzR_2.46.0.tar.gz7.4 MiB2026-04-29 13:50:41
SpatialArtifacts_1.0.0.tar.gz7.3 MiB2026-04-29 13:50:53
methylumi_2.58.0.tar.gz7.3 MiB2026-04-29 13:50:38
cogena_1.46.0.tar.gz7.3 MiB2026-04-29 13:50:19
Gviz_1.56.0.tar.gz7.3 MiB2026-04-29 13:50:30
hipathia_3.12.0.tar.gz7.3 MiB2026-04-29 13:50:31
Rgraphviz_2.56.0.tar.gz7.3 MiB2026-04-29 13:50:47
recount_1.38.0.tar.gz7.3 MiB2026-04-29 13:50:46
CTexploreR_1.8.0.tar.gz7.3 MiB2026-04-29 13:50:20
MAST_1.38.0.tar.gz7.3 MiB2026-04-29 13:50:36
ChIPseeker_1.48.0.tar.gz7.2 MiB2026-04-29 13:50:18
shinyMethyl_1.48.0.tar.gz7.2 MiB2026-04-29 13:50:52
MetaboDynamics_2.2.0.tar.gz7.2 MiB2026-04-29 13:50:37
miloR_2.7.2.tar.gz7.2 MiB2026-04-22 16:00:09
affyPLM_1.88.0.tar.gz7.2 MiB2026-04-29 13:50:12
MetaProViz_4.0.0.tar.gz7.1 MiB2026-04-29 13:50:37
geneplast_1.38.0.tar.gz7.1 MiB2026-04-29 13:50:28
IsoformSwitchAnalyzeR_2.12.0.tar.gz7.0 MiB2026-04-29 13:50:33
clevRvis_1.12.0.tar.gz7.0 MiB2026-04-29 13:50:18
CTdata_1.12.0.tar.gz7.0 MiB2026-04-29 13:50:20
ggspavis_1.18.0.tar.gz6.9 MiB2026-04-29 13:50:29
treekoR_1.20.0.tar.gz6.9 MiB2026-04-29 13:50:59
DESpace_2.4.0.tar.gz6.9 MiB2026-04-29 13:50:22
musicatk_2.6.0.tar.gz6.9 MiB2026-04-29 13:50:41
tidyexposomics_1.0.0.tar.gz6.9 MiB2026-04-29 13:50:58
flowGraph_1.20.0.tar.gz6.8 MiB2026-04-29 13:50:27
anglemania_1.2.0.tar.gz6.8 MiB2026-04-30 16:00:08
TFEA.ChIP_1.32.0.tar.gz6.8 MiB2026-04-29 13:50:58
Rhisat2_1.28.0.tar.gz6.7 MiB2026-04-29 13:50:47
flowcatchR_1.46.0.tar.gz6.7 MiB2026-04-29 13:50:26
sosta_1.4.0.tar.gz6.7 MiB2026-04-29 13:50:53
SNPhood_1.41.0.tar.gz6.7 MiB2025-11-05 17:00:05
proBatch_2.0.0.tar.gz6.7 MiB2026-04-29 13:50:44
chopsticks_1.78.0.tar.gz6.6 MiB2026-04-29 13:50:18
iSEEhub_1.14.0.tar.gz6.6 MiB2026-04-29 13:50:33
rifi_1.16.0.tar.gz6.6 MiB2026-04-29 13:50:47
affycoretools_1.84.0.tar.gz6.6 MiB2026-04-29 13:50:12
BreastSubtypeR_1.4.0.tar.gz6.6 MiB2026-04-29 13:50:15
CatsCradle_1.6.0.tar.gz6.5 MiB2026-04-29 13:50:16
DiffBind_3.22.1.tar.gz6.5 MiB2026-05-02 16:00:09
splatter_1.36.0.tar.gz6.5 MiB2026-04-29 13:50:54
RCy3_2.32.0.tar.gz6.5 MiB2026-04-29 13:50:46
synergyfinder_3.20.0.tar.gz6.5 MiB2026-04-29 13:50:57
RbcBook1_1.80.0.tar.gz6.4 MiB2026-04-29 13:50:46
MOSim_2.8.0.tar.gz6.4 MiB2026-04-29 13:50:39
pathMED_1.4.0.tar.gz6.3 MiB2026-04-29 13:50:43
miaTime_1.2.0.tar.gz6.3 MiB2026-04-29 13:50:38
plaid_1.0.0.tar.gz6.3 MiB2026-04-29 13:50:44
DNAfusion_1.14.0.tar.gz6.3 MiB2026-04-29 13:50:23
GenomicSuperSignature_1.20.0.tar.gz6.3 MiB2026-04-29 13:50:28
Pedixplorer_1.8.0.tar.gz6.3 MiB2026-04-29 13:50:43
GenomicDistributions_1.20.0.tar.gz6.2 MiB2026-04-29 13:50:28
traseR_1.42.0.tar.gz6.2 MiB2026-04-29 13:50:59
metaSeq_1.52.0.tar.gz6.2 MiB2026-04-29 13:50:37
MCbiclust_1.36.0.tar.gz6.2 MiB2026-04-29 13:50:36
spatialFDA_1.4.0.tar.gz6.2 MiB2026-04-29 13:50:54
HistoImagePlot_1.0.0.tar.gz6.2 MiB2026-04-29 13:50:31
NuPoP_2.20.0.tar.gz6.1 MiB2026-04-29 13:50:41
scECODA_1.0.0.tar.gz6.1 MiB2026-04-29 13:50:50
psichomics_1.38.0.tar.gz6.1 MiB2026-04-29 13:50:45
phyloseq_1.56.0.tar.gz6.1 MiB2026-04-29 13:50:43
MetMashR_1.6.0.tar.gz6.1 MiB2026-04-29 13:50:38
genomation_1.44.0.tar.gz6.0 MiB2026-04-29 13:50:28
damidBind_1.0.0.tar.gz6.0 MiB2026-04-29 13:50:21
NADfinder_1.36.0.tar.gz6.0 MiB2026-04-29 13:50:41
monaLisa_1.18.0.tar.gz6.0 MiB2026-04-29 13:50:39
TFutils_1.32.0.tar.gz6.0 MiB2026-04-29 13:50:58
fgsea_1.38.0.tar.gz6.0 MiB2026-04-29 13:50:26
SpliceImpactR_1.0.0.tar.gz5.9 MiB2026-04-29 13:50:54
gDRimport_1.10.0.tar.gz5.9 MiB2026-04-29 13:50:27
DeconvoBuddies_1.4.0.tar.gz5.9 MiB2026-04-29 13:50:22
benchdamic_1.18.0.tar.gz5.9 MiB2026-04-29 13:50:14
QFeatures_1.22.0.tar.gz5.9 MiB2026-04-29 13:50:45
projectR_1.28.0.tar.gz5.9 MiB2026-04-29 13:50:45
fRagmentomics_1.0.0.tar.gz5.9 MiB2026-04-29 13:50:27
GUIDEseq_1.42.0.tar.gz5.9 MiB2026-04-29 13:50:30
msqrob2_1.20.0.tar.gz5.9 MiB2026-04-29 13:50:40
methodical_1.8.0.tar.gz5.9 MiB2026-04-29 13:50:37
stPipe_1.2.0.tar.gz5.8 MiB2026-04-29 13:50:55
cytolib_2.24.0.tar.gz5.8 MiB2026-04-29 13:50:21
microRNA_1.70.0.tar.gz5.7 MiB2026-04-29 13:50:38
PureCN_2.18.0.tar.gz5.7 MiB2026-04-29 13:50:45
GenomicPlot_1.10.0.tar.gz5.7 MiB2026-04-29 13:50:28
TSAR_1.10.0.tar.gz5.7 MiB2026-04-29 13:51:00
MutationalPatterns_3.22.0.tar.gz5.7 MiB2026-04-29 13:50:41
CCAFE_1.4.0.tar.gz5.7 MiB2026-04-29 13:50:16
BgeeCall_1.28.0.tar.gz5.7 MiB2026-04-29 13:50:14
ideal_2.6.0.tar.gz5.7 MiB2026-04-29 13:50:32
ropls_1.44.0.tar.gz5.7 MiB2026-04-29 13:50:48
marray_1.90.0.tar.gz5.6 MiB2026-04-29 13:50:36
BSgenome_1.80.0.tar.gz5.6 MiB2026-04-29 13:50:16
cellmig_1.2.0.tar.gz5.6 MiB2026-04-29 13:50:17
scToppR_1.0.0.tar.gz5.6 MiB2026-04-29 13:50:51
ChromSCape_1.22.0.tar.gz5.5 MiB2026-04-29 13:50:18
hdxmsqc_1.8.0.tar.gz5.5 MiB2026-04-29 13:50:31
CEMiTool_1.36.0.tar.gz5.5 MiB2026-04-29 13:50:17
DOSE_4.6.0.tar.gz5.5 MiB2026-04-29 13:50:23
staRgate_1.0.0.tar.gz5.5 MiB2026-04-29 13:50:55
VariantTools_1.54.0.tar.gz5.4 MiB2026-04-29 13:51:00
iscream_1.2.0.tar.gz5.4 MiB2026-04-29 13:50:33
FlowSOM_2.20.0.tar.gz5.4 MiB2026-04-29 13:50:27
RUCova_1.4.0.tar.gz5.4 MiB2026-04-29 13:50:48
DenoIST_1.0.0.tar.gz5.4 MiB2026-04-29 13:50:22
sights_1.38.0.tar.gz5.4 MiB2026-04-29 13:50:52
seqPattern_1.44.0.tar.gz5.4 MiB2026-04-29 13:50:51
smoppix_1.4.0.tar.gz5.3 MiB2026-04-29 13:50:53
limmaGUI_1.88.0.tar.gz5.3 MiB2026-04-29 13:50:35
epivizrChart_1.34.0.tar.gz5.3 MiB2026-04-29 13:50:25
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BiocVersion_3.23.1.tar.gz990 B2025-10-31 12:39:35