Sadiq, H. (2026), "queeems: Quantify the Extent of Evolutionary Evidence in Molecular Sequences", Bioconductor R Package. This file documents package changes since first submission on Bioconductor. 0.99.0 (2026-03-11): First Submitted Version + Pushed first fully functional version to Git. + Submitted on Bioconductor for review. 0.99.1 - 0.99.4 (2026-03-25): Edits After First Bioconductor Build + Updated R version. + Addressed R CMD CHECK warnings. + Replaced "paste0" occurrences with "paste". + Replaced "import" with "importFrom" in NAMESPACE. + Deleted all "::" occurrences. + Updated vignettes so that it includes literature review and motivation. 0.99.5 - 0.99.8 (2026-04-28): Incorporated Bioconductor reviewer (@jwokaty) comments + Added descriptions for approaches `B` and `C` in `seqSaturation.R`. + Streamlined `Depends`, `Imports`, `Suggests`, `Enhances` fields. + Replaced `import` with `importFrom` in NAMESPACE + Added more function defaults. + Updare tests to accommodate changes. + Fine-tuned vignettes