Changes in version 0.99.3 (2024-10-17)                 

MINOR CHANGES

  - Addressed 'Consider shorter lines' NOTE from BiocCheck.

                 Changes in version 0.99.2 (2024-10-17)                 

MINOR CHANGES

  - Reduced size of TMSig vignette.

                 Changes in version 0.99.1 (2024-09-30)                 

SIGNIFICANT USER-VISIBLE CHANGES

  - Renamed functions to adhere to Bioconductor style: cluster_sets to
    clusterSets, decompose_sets to decomposeSets, filter_sets to
    filterSets, gmt_to_list to readGMT, incidence to sparseIncidence,
    incidence_to_list to incidenceToList, invert_sets to invertSets,
    range_extend to extendRangeNum, camera_color_fun to cameraColorFun,
    gsea_color_fun to gseaColorFun.
  - Converted functions sparseIncidence, filterSets, and invertSets to
    S4 generics and add methods for objects of class GSEABase::GeneSet
    and GSEABase::GeneSetCollection. Added paragraph explaining how
    sparseIncidence differs from GSEABase::incidence.
  - cameraPR.matrix(): added "ZScore" column to results (placed before
    "PValue" column). The default value of the statistic_column
    parameter of enrichmap was also updated to "ZScore".
  - enrichmap(): heatmap rectangle fill and border color can now be
    changed via the heatmap_args parameter.
  - enrichmap(): color legend title can now be changed via heatmap_args
    = list(name = "new title") instead of heatmap_args =
    list(heatmap_legend_param = list(title = "new title")).
  - enrichmap(): added examples to documentation. Default text size is
    now controlled by the cell_size argument.
  - enrichmap(): updated the heatmap layer function; all bubbles,
    regardless of significance, will have a radius of at least 0.2 *
    cell_size.

MINOR CHANGES

  - Added inst/script/c5.go.v2023.2.Hs.symbols.txt file to describe the
    process used to generate c5.go.v2023.2.Hs.symbols.gmt.gz.

BUG FIXES

  - Fixed manual build errors caused by special characters used in LaTeX
    equations.

                 Changes in version 0.99.0 (2024-08-24)                 

  - Initial version.