Changes in version 0.99.5                        

  - as.data.frame() is also exported as an S3 method. Consequently,
    removing as.data.table() method that has become redundant.

                       Changes in version 0.99.4                        

  - keyType argument of GOaGO() is now optional. If not provided,
    keyType attribute of genePairs, as set by annotateInteractions(), is
    used instead.

                       Changes in version 0.99.3                        

  - New function annotateInteractions() to extract gene pairs from
    paired genomic regions, along with helper functions
    annotateAnchors() and convertTranscriptsToTSS().

  - Vignette section on the above, using example BEDPE file provided in
    inst/extdata/.

  - Renamed parameter minTermPairs to minCount in GOaGO() and plotting
    functions for consistency.

  - More readable default point shape and scale for point size in
    plotting functions.

  - Changed license from GPL (>= 3) to a more permissive Artistic-2.0.

                       Changes in version 0.99.2                        

  - No user-facing changes.

                       Changes in version 0.99.1                        

  - Initial Bioconductor submission.