GEOexplorer
This is the released version of GEOexplorer; for the devel version, see GEOexplorer.
GEOexplorer: a webserver for gene expression analysis and visualisation
Bioconductor version: Release (3.21)
GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).
Author: Guy Hunt [aut, cre]
, Rafael Henkin [ctb, ths]
, Alfredo Iacoangeli [ctb, ths]
, Fabrizio Smeraldi [ctb, ths]
, Michael Barnes [ctb, ths]
Maintainer: Guy Hunt <guy.hunt at kcl.ac.uk>
citation("GEOexplorer")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GEOexplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GEOexplorer")| GEOexplorer | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, MicroRNAArray, Microarray, RNASeq, Software, Transcriptomics, mRNAMicroarray |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (4 years) |
| License | GPL-3 |
| Depends | shiny, limma, Biobase, plotly, enrichR, R (>= 4.1.0) |
| Imports | DT, XML, httr, sva, xfun, edgeR, htmltools, factoextra, heatmaply, pheatmap, scales, shinyHeatmaply, shinybusy, ggplot2, stringr, umap, GEOquery, impute, grDevices, stats, graphics, markdown, knitr, utils, xml2, R.utils, readxl, shinycssloaders, car |
| System Requirements | |
| URL | https://github.com/guypwhunt/GEOexplorer/ |
| Bug Reports | https://github.com/guypwhunt/GEOexplorer/issues |
See More
| Suggests | rmarkdown, usethis, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GEOexplorer_1.14.0.tar.gz |
| Windows Binary (x86_64) | GEOexplorer_1.14.0.zip (64-bit only) |
| macOS Binary (x86_64) | GEOexplorer_1.14.0.tgz |
| macOS Binary (arm64) | GEOexplorer_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GEOexplorer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GEOexplorer |
| Bioc Package Browser | https://code.bioconductor.org/browse/GEOexplorer/ |
| Package Short Url | https://bioconductor.org/packages/GEOexplorer/ |
| Package Downloads Report | Download Stats |