FinfoMDS
This is the released version of FinfoMDS; for the devel version, see FinfoMDS.
Multidimensional Scaling with F-ratio for microbiome visualization
Bioconductor version: Release (3.22)
F-informed MDS is a new multidimensional scaling-based ordination method that configures data distribution based on the F-statistic (i.e., the ratio of dispersion between groups with shared or differing labels).
Author: Soobin Kim [aut, cre], Hyungseok Kim [aut]
Maintainer: Soobin Kim <soob.kim00 at gmail.com>
citation("FinfoMDS")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FinfoMDS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FinfoMDS")| vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DimensionReduction, Microbiome, MultidimensionalScaling, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.22 (R-4.5) (< 6 months) |
| License | GPL-3 |
| Depends | R (>= 4.4.0) |
| Imports | phyloseq |
| System Requirements | |
| URL | https://github.com/soob-kim/FinfoMDS |
| Bug Reports | https://github.com/soob-kim/FinfoMDS/issues |
See More
| Suggests | testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | FinfoMDS_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | FinfoMDS_1.0.0.tgz |
| macOS Binary (arm64) | FinfoMDS_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/FinfoMDS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FinfoMDS |
| Bioc Package Browser | https://code.bioconductor.org/browse/FinfoMDS/ |
| Package Short Url | https://bioconductor.org/packages/FinfoMDS/ |
| Package Downloads Report | Download Stats |