Data analysis for Single File Injections (SFIs) mode LC-MS analysis

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Documentation for package ‘sfi’ version 1.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

find_2d_peaks	Feature extraction core function
find_peaks_low_res	Find peaks in low-resolution data using the 2D peak finding algorithm
getidelta	Optimize Delta Retention Time
getidelta.default	Optimize Delta Retention Time
getidelta.sfi_peaks	Optimize Delta Retention Time
getmzml	Read mzML File and Extract m/z, Retention Time, and Intensity
getsff	Cluster and Pair m/z and Retention Time Features
getsff.default	Cluster and Pair m/z and Retention Time Features
getsff.sfi_peaks	Cluster and Pair m/z and Retention Time Features
getsfm	Generate Sample Feature Matrix (SFM)
getsfm.default	Generate Sample Feature Matrix (SFM)
getsfm.sfi_peaks	Generate Sample Feature Matrix (SFM)
getwindow	Determine Optimal Retention Time Window
getwindow.default	Determine Optimal Retention Time Window
getwindow.sfi_peaks	Determine Optimal Retention Time Window
get_qc_features	Generate Quality Control Feature List
get_qc_features.default	Generate Quality Control Feature List
get_qc_features.sfi_peaks	Generate Quality Control Feature List
get_sfi_params	Quality Control for Mass Spectrometry Data
get_sfi_params.default	Quality Control for Mass Spectrometry Data
get_sfi_params.sfi_peaks	Quality Control for Mass Spectrometry Data
run_app	Run sfi Shiny App
sfi	Demo sfi data