Package: TEQC
Type: Package
Title: Quality control for target capture experiments
Version: 4.34.0
Date: 2025-07-23
Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma
Maintainer: Sarah Bonnin <Sarah.Bonnin@crg.eu>
Description: Target capture experiments combine hybridization-based (in
        solution or on microarrays) capture and enrichment of genomic
        regions of interest (e.g. the exome) with high throughput
        sequencing of the captured DNA fragments. This package provides
        functionalities for assessing and visualizing the quality of
        the target enrichment process, like specificity and sensitivity
        of the capture, per-target read coverage and so on.
Depends: methods, BiocGenerics (>= 0.1.0), IRanges (>= 1.13.5),
        Rsamtools, hwriter
Imports: S4Vectors, Seqinfo, GenomicRanges, Biobase (>= 2.15.1)
License: GPL (>= 2)
LazyLoad: yes
biocViews: QualityControl, Microarray, Sequencing, Genetics
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:35:02 UTC
RemoteUrl: https://github.com/bioc/TEQC
RemoteRef: RELEASE_3_23
RemoteSha: cfaf74a03981e2c685ed3293dd2b391615b82af0
NeedsCompilation: no
Packaged: 2026-04-30 06:56:06 UTC; root
Built: R 4.6.0; ; 2026-04-30 06:59:56 UTC; windows
