Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets

---

Documentation for package ‘Macarron’ version 1.16.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

calAVA	Calculate abundance versus anchor (AVA) of metabolic features.
calES	Calculate effect size of differential abundance of metabolic features.
calQval	Calculate q-value of differential abundance of metabolic features.
chem_taxonomy	Chemical taxonomy lookup table
decorateID	Create a chemical taxonomy table for annotated metabolic features. Uses a pregenerated chemical taxonomy table shipped with the package to assign chemical subclass and class to annotated features.
findMacMod	Cluster metabolic features based on covarying abundances into modules
Macarron	Macarron
makeDisMat	Create a biweight midcorrelation (WGCNA::bicor()) based distance matrix.
prepInput	Create a SummarizedExperiment object
prioritize	Rank metabolic features and prioritize based on predicted bioactivity.
showBest	View highly prioritized bioactives grouped by modules.