Package: GOaGO
Title: Gene Ontology enrichment analysis of gene pairs
Version: 1.0.0
Authors@R: person("Aleksander", "Jankowski",
    email = "aleksander.jankowski@uw.edu.pl",
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0002-2212-6224"))
Description: GO-a-GO annotates Gene Ontology terms that are enriched in
        a given set of gene pairs. The enrichment is calculated from a
        permutation test for overrepresentation of gene pairs that are
        associated with a shared term. Such gene pairs are counted for
        the original set of gene pairs and compared against randomized
        sets in which the structure of the pairs is preserved, but the
        gene identities (including the associated terms) are permuted.
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
Imports: AnnotationDbi, BiocGenerics, BiocParallel, clusterProfiler,
        data.table, DOSE, GenomeInfoDb, GenomicRanges, ggplot2,
        ggridges, Matrix, qvalue, S4Vectors
Depends: R (>= 4.4.0), methods
biocViews: GO, GeneSetEnrichment
URL: https://github.com/ajank/GOaGO
BugReports: https://github.com/ajank/GOaGO/issues
RoxygenNote: 7.3.3
Suggests: BiocStyle, GenomicInteractions, ggrepel, knitr, org.Hs.eg.db,
        rmarkdown, rtracklayer, testthat,
        TxDb.Hsapiens.UCSC.hg19.knownGene
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:07:20 UTC
RemoteUrl: https://github.com/bioc/GOaGO
RemoteRef: RELEASE_3_23
RemoteSha: ace0eb8d032c2f8f769deb5408704797a872fc35
NeedsCompilation: no
Packaged: 2026-04-29 22:20:57 UTC; root
Author: Aleksander Jankowski [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2212-6224>)
Maintainer: Aleksander Jankowski <aleksander.jankowski@uw.edu.pl>
Built: R 4.6.0; ; 2026-04-29 22:24:44 UTC; windows
