Package: DEWSeq
Type: Package
Title: Differential Expressed Windows Based on Negative Binomial
        Distribution
Version: 1.26.0
Authors@R: 
    c(person("Sudeep","Sahadevan",email= "sahadeva@embl.de",role="aut"), 
    person("Thomas","Schwarzl",email="schwarzl@embl.de",role="aut"),
    person("bioinformatics team","Hentze",email="biohentze@embl.de",role=c("aut","cre")))
Description: DEWSeq is a sliding window approach for the analysis of
        differentially enriched binding regions eCLIP or iCLIP next
        generation sequencing data.
Imports: BiocGenerics, data.table(>= 1.11.8), Seqinfo, GenomicRanges,
        methods, S4Vectors, SummarizedExperiment, stats, utils
Depends: R(>= 4.0.0), R.utils, DESeq2, BiocParallel
Suggests: knitr, tidyverse, rmarkdown, testthat, BiocStyle, IHW
VignetteBuilder: knitr
biocViews: Sequencing, GeneRegulation, FunctionalGenomics,
        DifferentialExpression
License: LGPL (>= 3)
URL: https://github.com/EMBL-Hentze-group/DEWSeq/
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.1.2
BugReports: https://github.com/EMBL-Hentze-group/DEWSeq/issues
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:51:17 UTC
RemoteUrl: https://github.com/bioc/DEWSeq
RemoteRef: RELEASE_3_23
RemoteSha: 213a0b42ee4cc719a0ac9881c4ccce0b99cdf904
NeedsCompilation: no
Packaged: 2026-04-29 21:00:08 UTC; root
Author: Sudeep Sahadevan [aut],
  Thomas Schwarzl [aut],
  bioinformatics team Hentze [aut, cre]
Maintainer: bioinformatics team Hentze <biohentze@embl.de>
Built: R 4.6.0; ; 2026-04-29 21:04:54 UTC; windows
