Package: OGRE
Type: Package
Title: Calculate, visualize and analyse overlap between genomic regions
Version: 1.16.0
Authors@R: c(
    person("Sven", "Berres", email="svenbioinf@gmail.com", role = c("aut","cre")),
    person("Jörg", "Gromoll", role = c("ctb")),
    person("Marius", "Wöste", role = c("ctb")),
    person("Sarah", "Sandmann", role = c("ctb")),
    person("Sandra", "Laurentino", role = c("ctb")))
Description: OGRE calculates overlap between user defined genomic
        region datasets. Any regions can be supplied i.e. genes, SNPs,
        or reads from sequencing experiments. Key numbers help analyse
        the extend of overlaps which can also be visualized at a
        genomic level.
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Imports: GenomicRanges, methods, data.table, assertthat, ggplot2, Gviz,
        IRanges, AnnotationHub, grDevices, stats, Seqinfo,
        GenomeInfoDb, shiny, shinyFiles, DT, rtracklayer,
        shinydashboard, shinyBS,tidyr
Depends: R (>= 4.2.0), S4Vectors
Suggests: testthat (>= 3.0.0), knitr (>= 1.36), rmarkdown (>= 2.11)
biocViews: Software, WorkflowStep, BiologicalQuestion, Annotation,
        Metagenomics, Visualization, Sequencing
BugReports: https://github.com/svenbioinf/OGRE/issues
URL: https://github.com/svenbioinf/OGRE/
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:57:40 UTC
RemoteUrl: https://github.com/bioc/OGRE
RemoteRef: RELEASE_3_23
RemoteSha: a9ea2d5dd8e981e6af21ea0eb05fc6362f9852ef
NeedsCompilation: no
Packaged: 2026-04-29 23:41:04 UTC; root
Author: Sven Berres [aut, cre],
  Jörg Gromoll [ctb],
  Marius Wöste [ctb],
  Sarah Sandmann [ctb],
  Sandra Laurentino [ctb]
Maintainer: Sven Berres <svenbioinf@gmail.com>
Built: R 4.6.0; ; 2026-04-29 23:45:26 UTC; windows
