bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
4ec1a482c8a7a77ce38fb4674042a2a3 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
9da9826b6ca1027ee9f2aa59edf16cbc *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
0a417073ec16b745732085bff61c8a3c *Meta/hsearch.rds
0098e33182e97f4975f0e22720d674a3 *Meta/links.rds
c01f5c799eb38631b86fe18fefcfe366 *Meta/nsInfo.rds
9d6e6e7100805ee985645445ade55ad5 *Meta/package.rds
8533dc61c6b113d7825e891f1276b086 *Meta/vignette.rds
fc869ee2ea4207aedc3b58907a28f0af *NAMESPACE
f2b014d809547159ad158bb137a77b07 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
26eb8cdb8c011464c19c4c2e09dedc98 *R/GenomicAlignments.rdb
934796ac3424de06a4572e2ec332551f *R/GenomicAlignments.rdx
779e0034c6f577700614026cd90a618a *README.md
244300f607fd313bc0f1e12aac6fa8d3 *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
99541adb2bc139aaae8be231f1b35581 *doc/GenomicAlignmentsIntroduction.pdf
cfb9075601276b78b366f36d6f74cc95 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
005e45796157ca9a7c457b00967b03eb *doc/OverlapEncodings.pdf
ce6b7e63648a74109c4e351265c9eb26 *doc/WorkingWithAlignedNucleotides.R
5e284095ceea6b18ee2bb1a59c19b8f4 *doc/WorkingWithAlignedNucleotides.Rmd
c79f8c731c65d3f331161d7e237e54ac *doc/WorkingWithAlignedNucleotides.html
5d0c08f747978c6d65754da534909dd8 *doc/index.html
111d660eb9166747c920a9df9295bfa7 *doc/summarizeOverlaps.R
8d6114b1245e4f25b7db01f3ff3111f5 *doc/summarizeOverlaps.Rnw
34a516de0a0ea3e7f523e6b47faf23b8 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
10259c85be90a108d689ddb70063ff20 *help/AnIndex
b51a4d453850dd0dc9548ac55761c813 *help/GenomicAlignments.rdb
39e19f9468637e6468de0c0c195d7064 *help/GenomicAlignments.rdx
16bef17ed2d1d2b505b16909073dc406 *help/aliases.rds
3a3852f457d5bb89d902173bf008655e *help/paths.rds
1e8e0d1cd2937d5cbebf375a8cd0f992 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
c6eb376dd81521b863a4da1e352484b1 *libs/x64/GenomicAlignments.dll
c69c8cccc9e735c1087f3b593f50a25e *libs/x64/symbols.rds
a7b36b6b3e11006f2eb35e0c74d36328 *unitTests/test_GAlignments-class.R
154347216f4ba7be01f4202c3981634e *unitTests/test_GAlignmentsList-class.R
4bcd8177a9a9003a0c3a606a332682f5 *unitTests/test_coordinate-mapping-methods.R
6423ceb23b9aa2509a64f02c53ff9f57 *unitTests/test_findSpliceOverlaps-methods.R
50ce35ec47c6be35b91c2cc63b9fdbaa *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
9610e31d42cdcec687fb5f4fb264b906 *unitTests/test_readGAlignmentsList.R
fff74f636e12162e8d287c1ff1537716 *unitTests/test_summarizeOverlaps-methods.R
