Gene Ontology enrichment analysis of gene pairs

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Documentation for package ‘GOaGO’ version 1.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

annotateAnchors	Associate interaction anchors to the nearest TSSes
annotateInteractions	Associate interactions to gene pairs
as.data.frame	Coerce a 'GOaGO-result' object to a data frame
as.data.frame-method	Coerce a 'GOaGO-result' object to a data frame
convertTranscriptsToTSS	Convert gene transcripts to Transcription Start Sites
DotPlot	Dotplot of the enriched Gene Ontology terms
genePairs	Accessors and show method for 'GOaGO-result' objects
genePairsGM12878	Gene pairs associated with chromatin loops in GM12878 cell line
GOaGO	Gene Ontology enrichment analysis in a set of gene pairs
GOaGO-accessors	Accessors and show method for 'GOaGO-result' objects
GOaGO-result-class	An S4 class to represent the results of GO-a-GO enrichment analysis
keyType	Accessors and show method for 'GOaGO-result' objects
organism	Accessors and show method for 'GOaGO-result' objects
organism-method	Accessors and show method for 'GOaGO-result' objects
RidgePlot	Ridgeplot of the sampling distributions for the randomized gene pairs
show	Accessors and show method for 'GOaGO-result' objects
show-method	Accessors and show method for 'GOaGO-result' objects
termGenePairs	Extract the enriched Gene Ontology terms along with gene pairs sharing them
uniqueGenePairs	Extract unique gene pairs from the data frame provided