Package: BasicSTARRseq
Type: Package
Title: Basic peak calling on STARR-seq data
Version: 1.40.0
Date: 2025-07-24
Author: Annika Buerger
Maintainer: Annika Buerger <annika.buerger@ukmuenster.de>
Imports: S4Vectors,methods,IRanges,Seqinfo,stats
Depends: GenomicRanges,GenomicAlignments
Description: Basic peak calling on STARR-seq data based on a method
        introduced in "Genome-Wide Quantitative Enhancer Activity Maps
        Identified by STARR-seq" Arnold et al. Science. 2013 Mar
        1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013
        Jan 17.
License: LGPL-3
Suggests: knitr
VignetteBuilder: knitr
biocViews: PeakDetection, GeneRegulation, FunctionalPrediction,
        FunctionalGenomics, Coverage
NeedsCompilation: no
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:42:35 UTC
RemoteUrl: https://github.com/bioc/BasicSTARRseq
RemoteRef: RELEASE_3_23
RemoteSha: 62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846
Packaged: 2026-04-29 18:11:48 UTC; root
Built: R 4.6.0; ; 2026-04-29 18:28:52 UTC; windows
