# Generated by roxygen2: do not edit by hand

export(ADOSign)
export(APMSign)
export(ASCSign)
export(CD39CD8TcellSign)
export(CINSign)
export(CISSign)
export(COXISSign)
export(CombinedSign)
export(DNArepSign)
export(ECMSign)
export(EMTSign)
export(HRDSSign)
export(ICBResponseSign)
export(IFNSign)
export(IPRESSign)
export(IPSOVSign)
export(IPSSign)
export(IRGSign)
export(ISCSign)
export(LRRC15CAFSign)
export(MITFlowPTENnegSign)
export(MPSSign)
export(PassONSign)
export(SCSubtypeSign)
export(TGFBSign)
export(TLSSign)
export(TinflamSign)
export(VEGFSign)
export(autophagySign)
export(availableSignatures)
export(cellCycleSign)
export(chemokineSign)
export(consensusOVSign)
export(correlationSignPlot)
export(evaluationSignPlot)
export(expandedImmuneSign)
export(ferroptosisSign)
export(geneHeatmapSignPlot)
export(getSignGenes)
export(glycolysisSign)
export(heatmapSignPlot)
export(hypoxiaSign)
export(immuneCytSign)
export(immunoScoreSign)
export(interferonSign)
export(lipidMetabolismSign)
export(matrisomeSign)
export(metalSign)
export(mitoticIndexSign)
export(multipleSign)
export(oneSignPlot)
export(oxphosSign)
export(pyroptosisSign)
export(ridgelineSignPlot)
export(stateSign)
export(stemCellCD49fSign)
export(stressSign)
export(survivalSignPlot)
import(SpatialExperiment)
import(ggplot2)
import(patchwork)
importFrom(AnnotationDbi,mapIds)
importFrom(BiocGenerics,width)
importFrom(ComplexHeatmap,"%v%")
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,rowAnnotation)
importFrom(DGEobj.utils,convertCounts)
importFrom(GSVA,gsva)
importFrom(GSVA,gsvaParam)
importFrom(GSVA,ssgseaParam)
importFrom(IRanges,reduce)
importFrom(RColorBrewer,brewer.pal)
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Hsapiens.UCSC.hg19.knownGene)
importFrom(TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Hsapiens.UCSC.hg38.knownGene)
importFrom(consensusOV,get.subtypes)
importFrom(cowplot,plot_grid)
importFrom(dplyr,group_by)
importFrom(dplyr,summarise_all)
importFrom(ensembldb,exonsBy)
importFrom(ggplot2,cut_number)
importFrom(ggridges,geom_density_ridges)
importFrom(ggridges,geom_density_ridges_gradient)
importFrom(grid,gpar)
importFrom(magrittr,"%>%")
importFrom(matrixStats,rowMedians)
importFrom(maxstat,maxstat.test)
importFrom(methods,is)
importFrom(openair,corPlot)
importFrom(org.Hs.eg.db,org.Hs.eg.db)
importFrom(scales,rescale)
importFrom(stats,cor)
importFrom(stats,median)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(stats,weighted.mean)
importFrom(survival,Surv)
importFrom(survival,survfit)
importFrom(survminer,ggsurvplot)
importFrom(viridis,magma)
importFrom(viridis,viridis)
