Calculate_Likelihood_test
                        Output the maximum potential scale reduction
                        statistic of all parameters estimated
calcPMSLikelihood       A function for calculating the log-likelihood
                        from the data and parameters
convertFromTurbo_F      Restore the converted parameter F for turboEM
convertFromTurbo_Q      Restore the converted parameter Q for turboEM
convertToTurbo_F        Convert the parameter F so that turboEM can
                        treat
convertToTurbo_Q        Convert the parameter Q so that turboEM can
                        treat
cv_PMSignature          Output the maximum potential scale reduction
                        statistic of all parameters estimated
getBG                   Get the statsus of using the background
                        signature
getCounts               Get the count data in a matrix
getExposures            Get a matrix of mutational exposures of
                        signatures
getFeatureVec           Get a matrix of feature vector list
getFeatures             Get a vector of possible features
getK                    Get the number of signatures
getLL                   Get the values of loglikelihood
getLogLikelihoodC       Calculate the value of the log-likelihood for
                        given parameters
getSamplelist           Get the sample list
getSamplelistG          Get the sample list
getSignatures           Get an array of signature feature distributions
getTranscription        Get the statsus of specifying the transcription
                        bias
select_kth_fold         Output the training data or test data
splitG                  Output the maximum potential scale reduction
                        statistic of all parameters estimated
