5c977725dcbb3c94b8cfc1c63aeca578 *CITATION
f72a3561097a6144ba277f802dbaefe4 *DESCRIPTION
0bc83545628a897ddd4349ce45164341 *INDEX
6402f731167fbf33db338a4ada0f9594 *Meta/Rd.rds
9e3d3526489ff31b28384f89f5b87942 *Meta/data.rds
41622305d1b139d0fa70aaba76dca134 *Meta/features.rds
c65d862768beed82793d67b3d19f032d *Meta/hsearch.rds
3db5e6e349a76d00476ef944f55855d0 *Meta/links.rds
ef71cb146c335851a8649664d10bac0a *Meta/nsInfo.rds
37e5a29181c7eb75d9e28c516b6f3efa *Meta/package.rds
28b3b08a1e8850be96bc9a8dfb928f85 *Meta/vignette.rds
2d6e34925400c05f94f0dd5489da7986 *NAMESPACE
44ae129a9f93f36c44c550c510554cd2 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/scPipe
af0e3f2c8df4cdbcad8f56d46c9c5ef9 *R/scPipe.rdb
3c433b2e1b90478cd4ec8888c0edbf02 *R/scPipe.rdx
1dc17379efee0dc44aee270095903ff5 *data/sc_sample_data.RData
2594a9728f0d35790ec31657b0f9c880 *data/sc_sample_qc.RData
50ed3bb9bf3b8e2bfcbac7295cd32912 *doc/index.html
7a8148395334b7881b3537a1d88a1458 *doc/scPipe_atac_tutorial.R
fac35ad98ff921988ab09d4c63e9fafe *doc/scPipe_atac_tutorial.Rmd
fb1050e8a7068d64d7ca25a503ea9756 *doc/scPipe_atac_tutorial.html
e925c196fdab77e103f25c57a0dc5c35 *doc/scPipe_tutorial.R
0a3d3c7133a033dc6762eff98484e285 *doc/scPipe_tutorial.Rmd
63959bcda90d6a789a72051b440fcfdf *doc/scPipe_tutorial.html
339e0225f3294bf2bf89ac33d71a73c2 *extdata/ERCC92.fa
6e4cb84dc35b55f6c26e244c3d518583 *extdata/ERCC92_anno.gff3
5c38f2b5b92fce068413038b6fba8fe5 *extdata/NA_peaks.narrowPeak
e4d66f3d844251c128a1516f99be387c *extdata/annotations/chrom_hg19.sizes.gz
a9e325550e469eae60026d92fc9013e2 *extdata/annotations/chrom_hg38.sizes.gz
bf5bbe4ebba25023151b6aaa47684273 *extdata/annotations/chrom_mm10.sizes.gz
790756b2a525a329d57c43c4739d031c *extdata/annotations/hg19_blacklist.bed.gz
7e400a06268eaf5f0ca7fc2b7b03a206 *extdata/annotations/hg19_enhancer.bed.gz
8cc4a2825386c9ef48f7d86be5330aa1 *extdata/annotations/hg19_promoter.bed.gz
ed122041b44ad545023b01c9bb5bc8b5 *extdata/annotations/hg19_tss.bed.gz
899947fc14cf18264d330c241fbebca8 *extdata/annotations/hg38_blacklist.bed.gz
45598c486015f9e83c2abf37959d84c2 *extdata/annotations/hg38_enhancer.bed.gz
7428cc479aa8040e69991114c910e75c *extdata/annotations/hg38_promoter.bed.gz
23248c8eac286a01f34067d69146ecc6 *extdata/annotations/hg38_tss.bed.gz
6633431d5bcf900b8451dfbecf75be31 *extdata/annotations/mm10_blacklist.bed.gz
b0761f9607a92150b4fa36df1e390e62 *extdata/annotations/mm10_enhancer.bed.gz
1be4516f437836b23f33793b12dd6d29 *extdata/annotations/mm10_promoter.bed.gz
c8d4558c65c7102a48ec64d5d7ddf10e *extdata/annotations/mm10_tss.bed.gz
e6007becb38885068ee4c1569f11676c *extdata/barcode_anno.csv
80042076f61789a27e8120064fb17615 *extdata/chr21_modified_barcode_1000.csv
8577e8f76719bf43c33a7f7db593ef83 *extdata/ens_tiny_anno.gff3.gz
95dcee5780eae0513826393d7731faf6 *extdata/ens_tiny_anno.gtf.gz
4b69e9071aaebe7e0f0b72faba999836 *extdata/ensembl_hg38_chrY.gtf.gz
2775eff980dad9481fe7170ef11b3b29 *extdata/ensembl_y_tiny.gtf.gz
1ec5e129ea424597706f4b625327c69b *extdata/gen_tiny_anno.gff3.gz
84f6ae29496eb56652f373b91bfef183 *extdata/gen_tiny_anno.gtf.gz
260f6362f78cc5322a397bf26a357d4c *extdata/minimal_atac_example.md
220922b0d0b25aa599770ca139e2d2e1 *extdata/ref_tiny_anno.gff3.gz
a2b210f05cf05d9538be113fdc827e88 *extdata/report_template.Rmd
60ecd0d30f4bb5aee8a052a6051d2e1c *extdata/report_template_slim.Rmd
2e8a9b3ec72c20855fe9ff040f7ba0a4 *extdata/rmd_report_skeleton.Rmd
d3041dfa7f1a919f62fd9f3d7bbc74dd *extdata/sc-atac-sample-feature-matrix.RDS
975986fcc8841f9ab69d8e9cebc77d9e *extdata/sc-atac-sample-sparse-matrix.RDS
4f72dbb833c45e8d9417b4bc3a0b4716 *extdata/simu_R1.fastq.gz
6b555e64cd9a0e3dbe416284e857fae2 *extdata/simu_R2.fastq.gz
e3cdce6fb66269708c470cc0fd510cea *extdata/small_chr21.fa
b5bc2f8fb8514487ae2c5d8668461613 *extdata/small_chr21.fa.fai
07c8225066e7fd0deb5079031de63f77 *extdata/small_chr21_R1.fastq.gz
e68224782a73698a172c5c4e2e0b1eee *extdata/small_chr21_R2.fastq.gz
df2aa5c5d8348f56ac679203d8740846 *extdata/small_chr21_R3.fastq.gz
70bbfd382f07dbe60b793d2ac0991c1e *extdata/smallbarcode1col.csv
bfd28655dd909c4ae0f8f9f78ccb6392 *help/AnIndex
449b50d73f6faf629732db00a8385cb6 *help/aliases.rds
843d3e13bcfa96a1af44181becefbbd2 *help/paths.rds
be0abf86cf3734d31e678ad47ffefb51 *help/scPipe.rdb
6bff233dcb250a87216507c1e5a3d892 *help/scPipe.rdx
0f27828b53d01305311d03ac8c3db4d7 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
7da9b6f2fac79780b3131caac4174c7b *libs/x64/scPipe.dll
e5fb99679bfab62ef806afba63d0c4a3 *report_example.png
98b69e4793fedac6484ec350c67ff704 *scATAC-seq_workflow.png
e17bcd270318aaaabf8568c328e3d59c *scPipe.png
a4e7b825ee1d624e008b5bcb4659e78d *workflow.png
539036b9e7ef7b36171b51a4f8e69e75 *workflow_combined.png
