# Generated by roxygen2: do not edit by hand

export(Sarks)
export(blockInfo)
export(blockScores)
export(clusterCounts)
export(clusterKmers)
export(estimateFalsePositiveRate)
export(extendKmers)
export(kmerCounts)
export(kmerPeaks)
export(locateClusters)
export(locateKmers)
export(mergedKmerSubPeaks)
export(permutationDistribution)
export(permutationThresholds)
export(pruneIntervals)
export(regexCounts)
export(regexLocate)
export(sarksFilters)
export(sourceBlock)
importFrom(Biostrings,BStringSet)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,reverseComplement)
importFrom(Biostrings,writeXStringSet)
importFrom(IRanges,IRanges)
importFrom(IRanges,NCList)
importFrom(IRanges,findOverlaps)
importFrom(IRanges,from)
importFrom(binom,binom.exact)
importFrom(cluster,silhouette)
importFrom(rJava,.jnew)
importFrom(rJava,J)
importFrom(stats,as.dist)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(utils,read.table)
importFrom(utils,write.table)
