import("methods")
import("GenomicRanges")
import("abind")
import("IRanges")
importFrom("S4Vectors", "queryHits", "subjectHits")
importFrom("grDevices", "dev.list", "rainbow", "rgb")
importFrom("graphics", "axis", "barplot", "lines", "par", "rect",
           "segments", "text")
importFrom("stats", "chisq.test", "weighted.mean")
importFrom("utils", "modifyList", "read.delim")
importFrom("Rsamtools", "scanBam")
importFrom("Seqinfo", "seqlevels")
importFrom("baySeq", "getLibsizes")
importFrom("seqLogo", "makePWM", "seqLogo")
exportMethods("dim", "[", "show")
export("readRibodata", "findCDS", "frameCounting", "readingFrame", 
       "filterHits", "plotCDS", "plotTranscript", "sliceCounts", "rnaCounts", 
       "plotFS", "lengthDist", "libScales", "logoContext")
