QData                   Retrieve Relative Abundance Values
adductData              Retrieve Adduct Annotations
adjustData              Process and Filter Metabolomics Feature Lists
batchCombine            Stepwise Multi-batch LC-MS Alignment
calcScores              Compute Feature Similarity Scores
calcScoresParam         List calcScores Defaults
combineData             Obtain All Feature Data
combinedTable           Obtain Feature Alignment Report
combinerCheck           Obtain Errors for metabCombiner Object Checks
crossValFit             Cross Validation for Model Fits
datasets                Obtain Dataset IDs
detectFields            Detect metabData Input Columns
evaluateParams          Evaluate Similarity Score Parameters
featData                Obtain Feature Metadata
filterAnchors           Filter Outlier Ordered Pairs
filterRT                Filter Features by Retention Time Range
filtered                Retrieve Filtered Features
fit_gam                 Fit RT Projection Model With GAMs
fit_loess               Fit RT Projection Model With LOESS
fitgamParam             List fit_gam Defaults
fitloessParam           List fitLoess Defaults
getAnchors              Get Ordered Retention Time Pairs
getCoefficients         Obtain Last-Used Score Coefficients
getData                 Get Processed Dataset
getExtra                Get Extra Data Column Names
getModel                Get Fitted RT Model
getSamples              Get Sample Names From metabCombiner or
                        metabData Object
getStats                Get Object Statistics
idData                  Retrieve Feature Identities
identityAnchorSelection
                        Select Matching Ids as Anchors
isCombinedTable         Determine 'combinedTable' Validity
isMetabCombiner         Determine if object is a valid metabCombiner
                        object
isMetabData             Determine validity of input metabData object
iterativeAnchorSelection
                        Iterative Selection of Ordered Pairs
labelRows               Annotate and Remove Report Rows
labelRowsParam          List labelRows & reduceTable Defaults
metabBatches            Three LC-MS Metabolomics Batch Datasets
metabCombine            metabCombiner Wrapper Function
metabCombiner           Form a metabCombiner object.
metabCombiner-class     'metabCombiner' Combined Metabolomics Dataset
                        Class
metabData               Constructor for the metabData object.
metabData-class         'metabData' Single Metabolomics Dataset Class
mzData                  Retrieve m/z Values
mzFit                   Compute m/z Shift Model
mzGroup                 Binning of mass spectral features in m/z
                        dimension
mzfitParam              Parameterize m/z Shift Model
nonmatched              Get Nonmatched Features
objective               Weight Parameter Objective Function
opts.duplicate          Duplicate Feature Detection Parameters
plasma20                20 minute LC-MS Analysis of Human Plasma
plasma30                30 minute LC-MS Analysis of Human Plasma
plot,metabCombiner,ANY-method
                        Plot metabCombiner Fits
resolveRows             Resolve Conflicting Alignment Subgroups
rtData                  Retrieve Retention Time Values
scorePairs              Calculate Pairwise Alignment Scores
selectAnchors           Select Anchors for Nonlinear RT Model
selectAnchorsParam      List selectAnchors Defaults
updateTables            Update 'metabCombiner' Objects
write2file              Print metabCombiner Report to File.
x                       Obtain x & y Data Identifiers
