centromere              Retrieve base positions of centromeres
computeMBPCR            Estimate the copy number profile
estGlobParam            Estimate global parameters of copy number data
estProfileWithMBPCR     Estimate and print the copy number profile of
                        some chromosomes of a sample
estProfileWithMBPCRforOligoSnpSet
                        Estimate and print the copy number profile of
                        some chromosomes of samples in an oligoSnpSet
                        object
importCNData            Import the copy number data
jekoChr11Array250Knsp   Affymetrix GeneChip Mapping 250K NSP Array data
                        of JEKO-1 cell line (chr. 11)
logAdd                  Overflow-safe computation of the logarithm of a
                        sum
plotEstProfile          Plot the estimated profile of copy number data
rec10k                  Affymetrix GeneChip Mapping 10K Array data of
                        REC-1 cell line
writeEstProfile         Write the estimated profile of copy number data
