accelFailAnalysis       Accelerated Failure Analysis
analyzeSurvival         Survival analysis
bestInetgrator          Identifies the bestInetgrator
cleanAllData            Cleans and preprocesses data
computEigengenes        Compute eigengenes of combined modules.
computEigenloci         Computes an eigenloci for each gene
computeInetgrator       Computes an inetgrator
computeUnion            Computes union gene set
coxAnalysis             Cox analysis
createLocusGene         Mapping one locus to one gene.
distanceToTss           Computes distance of loci to the closest TSS
downloaData             Download and save TCGA data
electGenes              Selects input genes for iNETgrate analysis.
filterLowCor            Filters out genes or loci
findAliveCutoff         Find Alive Cutoff
findCore                Finds the most connected cluster of points
findTcgaDuplicates      Identify and remove duplicate samples
iNETgrate               iNETgrate - Runs entire iNETgrate pipeline.
iNETgrate-package       Integrates DNA methylation data with gene
                        expression in a single gene network
inferEigengenes         Infers features for the test(validation)
                        dataset
makeNetwork             Make network
plotKM                  Survival (Kaplan-Meier estimator) plots
plotLociNum             Plot number of loci per gene.
plotLociTss             Plots distance of loci to genes
prepareSurvival         Prepare survival data
preprocessDnam          Cleans DNA methylation data
sample2pat              Maps sample IDs to corresponding patient IDs
sampleData              Sample Data
toyCleanedAml           A subset of cleaned TCGA-LAML data
toyComputEloci          A subset of weighted DNA methylation profile of
                        TCGA-LAML data
toyEigengenes           A subset of weighted average of gene expression
                        present in each module
toyRawAml               A subset of TCGA-LAML data
