calcMetrics             Calculate metrics for probability matrix
clustByHood             Cluster the probability matrix with K-means
findNearCells           Find the k-th nearest cells for each cell
mergeByGroup            Merge probability matrix based on annotations
mergeHoodSpe            Merge probability matrix into SpatialExperiment
                        object.
perplexityPermute       Compute p-value for perplexity via permutation
plotColocal             Plot heatmap for neighbourhood analysis
plotHoodMat             Plot probability matrix as a heatmap
plotProbDist            Plot probability distribution
plotTissue              Plot cells based on cell position on tissue.
readHoodData            Read cellular position and annotation data into
                        a list object.
scanHoods               Scan cellular neighbourhoods.
