632701b698bfd2e27a05c8ad7acac7df *CITATION
7a27a65b9cdee8d8c8ad2aa6c46a0dfd *DESCRIPTION
e158a26a6f3676f282298f59b8aa1c16 *INDEX
db8569d3f200b32934cd71406e2e8f83 *Meta/Rd.rds
97f39cfa069205fc947ab1e51ea53d4e *Meta/features.rds
fc3ebafa5e953a506f3ca20fe45dbb91 *Meta/hsearch.rds
93a564348e619ac29a039cf4e5f3405c *Meta/links.rds
b9295add0d0aa4a6f0cd67a9ba8c96f3 *Meta/nsInfo.rds
a54b2dd02e664e79df2dbaa34ea60e81 *Meta/package.rds
26a5ca9f8178afb2301f56d6c8e911b1 *Meta/vignette.rds
ac7fe82d2ad864c20f2aae1fb82c4fe9 *NAMESPACE
05b8bce6dc4615009a2537217f24684e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/epialleleR
933933346bc74425b785819f24d5c643 *R/epialleleR.rdb
8afea02f41e4a9e8ea8477f80f10cfcd *R/epialleleR.rdx
f0ec8b7b14444bc51b11bda146862c47 *doc/epialleleR.R
4aef720c37fa96782ef30f37f401e346 *doc/epialleleR.Rmd
57a17cff61e183ee810802e00216fbfb *doc/epialleleR.html
68889f0195db417bffbbd0a088b5435e *doc/index.html
29b014b452bd19c30bdc37fc4696284a *doc/values.R
03f85e834ce630a5931fea355ddbeb5c *doc/values.Rmd
a1f4bbc88ca42ef2dc1723559d255aca *doc/values.html
58f833017ad83577c148c2c1e597e132 *extdata/amplicon.bed
b021a04d94a76e4d8609419f929d177b *extdata/amplicon.vcf.gz
fb65422720c8a20dd52b4cb349319df5 *extdata/amplicon.vcf.gz.tbi
08f6f073a2b915f0cce062b75daa8c39 *extdata/amplicon000meth.bam
8a9175527138cb03e08ccbb5eb1be447 *extdata/amplicon010meth.bam
5090d9f275a998bf55b41295e3a9a97a *extdata/amplicon100meth.bam
532c9c5addb7bb3edd980fbe8c51d680 *extdata/capture.bam
8238372c018ccbc0466a6f724fbaa479 *extdata/capture.bed
152066bcc0d8b507efea3a5ae073c000 *extdata/capture.vcf.gz
f0b16c21dcc3c8d56799294862c6c3d7 *extdata/capture.vcf.gz.tbi
eedee46794a999f6f590821b6f428021 *extdata/test/bsmap-pe-namesort-zs.bam
56f6d441dd87609b5199cae6f23dd38b *extdata/test/bsmap-pe-unsort-zs.bam
51e64e3834bfbd4cb8f63bcef10742f9 *extdata/test/bsmap-se-unsort-zs.bam
c730ae0b3d9e8e2c17fa5451286fcfe3 *extdata/test/bwameth-pe-namesort-yd.bam
39b3fe1f5a4caee160fdff98e42a7dec *extdata/test/bwameth-pe-unsort-yd.bam
59ea2d42f1d52689ba1c46a32c073de2 *extdata/test/bwameth-se-unsort-yd.bam
3bd4de272359f2ac18d2e5550a5b69c6 *extdata/test/bwameth-se-unsort.bam
ea45fdb271bd7d05ba62784f111818f2 *extdata/test/dragen-pe-namesort-xg-xm.bam
50bb3ae5e6a6917cbe29b1e3a8011e18 *extdata/test/dragen-pe-namesort-xg.bam
30bbb6967b8566d660e5c165e0673095 *extdata/test/dragen-pe-unsort-xg-xm.bam
e42654051562b1d37a3a881290361d1a *extdata/test/dragen-pe-unsort-xg.bam
bc5d756188832c02da88a55e5c969ee1 *extdata/test/dragen-pe.CX_report.txt.gz
f27b657a8644b7a190758d569a7134ca *extdata/test/dragen-se-unsort-xg-xm.bam
b970b667e937f219c1037bd223174c6c *extdata/test/dragen-se-unsort-xg.bam
958b1ce872a2853895c3b475eddf5815 *extdata/test/dragen-se.CX_report.txt.gz
7f81afe3a9442594661d37749f32d9b5 *extdata/test/empty.bam
50c39c99240cbde64a078c5141b7bd25 *extdata/test/reference.fasta.gz
7c064ec257d0c934b8715dd7b2ff4973 *extdata/test/reference.fasta.gz.fai
7dea362b3fac8e00956a4952a3d4f474 *extdata/test/reference.fasta.gz.gzi
7966570ddba8e7e49f9d4aab73787afc *help/AnIndex
1e9fc68ecfe8c2a29972db0e00ea7090 *help/aliases.rds
085ec6d42557fa74a7511574b1d1bb9f *help/epialleleR.rdb
77c6dcea9e1de54fcd9bbd6b5f2a21c4 *help/epialleleR.rdx
3e1604c36e8f95c2cb5758a613fac888 *help/paths.rds
653e3c11633ef20277e24f84e80739ab *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
143e1bc3222bf4eee2869fed00ed02c5 *libs/x64/epialleleR.dll
c6488bb9ece988cdd1ae8e7a8a46f5b5 *unitTests/test_callMethylation.R
a8690a788937f92bb8e8594b3f7a3536 *unitTests/test_extractPatterns.R
7d58c77c7a24dcf649b5c367c7c2cb5c *unitTests/test_generateBedEcdf.R
cc3b30eef6fe5fcb2242414220575adb *unitTests/test_generateBedReport.R
1834e36a5ba23a706b7410c843bf10e8 *unitTests/test_generateCytosineReport.R
f0f1a83f94db3fe65ca942334e817cd9 *unitTests/test_generateMhlReport.R
6ae098b505f772523affe99dc3dd138d *unitTests/test_generateVcfReport.R
3c5a0a9b2910244bee495afd52267c32 *unitTests/test_internals.R
2828c778c4a87a848156c0928ecc005e *unitTests/test_plotPatterns.R
b4117f11523453d0e3bec73291f3b889 *unitTests/test_preprocessBam.R
8211b224e9c7328761b03b5e2b548a50 *unitTests/test_preprocessGenome.R
b74fa5f432d9faf62cca3f1580efbf8e *unitTests/test_simulateBam.R
