# Generated by roxygen2: do not edit by hand

export(calculate_CES_score)
export(call_cnv)
export(create_PoN)
export(extract_insert_size)
export(get_fragment_profile)
export(get_solution_table)
export(get_zscore_profile)
export(plot_cnv_solution)
export(plot_distance_matrix)
export(plot_fragment_dist)
export(plot_sl_ratio)
export(plot_transformed_sl)
export(read_bamfile)
export(segmentByPSCB)
export(test_isize_KolmogorovSmirnov)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,pintersect)
importFrom(IRanges,IRanges)
importFrom(IRanges,mergeByOverlaps)
importFrom(IRanges,width)
importFrom(PSCBS,dropSegmentationOutliers)
importFrom(PSCBS,findLargeGaps)
importFrom(PSCBS,gapsToSegments)
importFrom(PSCBS,getSegments)
importFrom(PSCBS,ploidy)
importFrom(PSCBS,pruneByHClust)
importFrom(PSCBS,segmentByCBS)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(ggplot2,.data)
importFrom(magrittr,"%>%")
importFrom(rlang,.data)
importFrom(stats,density)
importFrom(stats,ks.test)
importFrom(stats,loess)
importFrom(stats,loess.control)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(utils,read.table)
