adductQuant	adductQuant
AdductQuantif-class	adductQuantif-class
AdductSpec-class	adductSpec-class
adductSpecGen	adductSpecGen
c,AdductQuantif-method	adductQuantif-class
c,AdductSpec-method	adductSpec-class
c,file.paths,peakQuantTable,peakIdData,AdductQuantif-method	adductQuantif-class
c,Specfile.paths,adductMS2spec,metaData,Parameters,AdductSpec-method	adductSpec-class
digestMod	digestMod
dotProdMatrix	dotProdMatrix
dotProdSpectra	dotProdSpectra
dynamicNoiseFilter	dynamicNoiseFilter
filterAdductTable	filterAdductTable
findPeaks	findPeaks
generateTargTable	generateTargTable
groupMS2spec,rtDevModels,sumAdductType,Parameters,AdductSpec-class	adductSpec-class
groupMS2spec,rtDevModels,sumAdductType,Peptides,AdductSpec-method	adductSpec-class
IsotopicDistributionMod	IsotopicDistributionMod
loessWrapperMod	loessWrapperMod
ms2Group	ms2Group
nAdjPeaks	nAdjPeaks
outputPeakTable	outputPeakTable
peakIdData,predIsoDist,targTable,AdductQuantif,AdductQuantif-class	adductQuantif-class
peakIdQuant_newMethod	peakIdQuant_newMethod
peakIntegrate	peakIntegrate
peakListId	peakListId
peakRangeSum	peakRangeSum
Peptides,specPepMatches,AdductSpec-class	adductSpec-class
predIsoDist,targTable,AdductQuantif-method	adductQuantif-class
probPeaks	probPeaks
retentionCorr	retentionCorr
rtDevModelling	rtDevModelling
rtDevModelSave	rtDevModelSave
show,c,file.paths,peakQuantTable,AdductQuantif,AdductQuantif-class	adductQuantif-class
show,c,Specfile.paths,adductMS2spec,metaData,AdductSpec-class	adductSpec-class
signalGrouping	signalGrouping
specPepMatches,AdductSpec-method	adductSpec-class
specSimPepId	specSimPepId
spectraCreate	spectraCreate
truePeakTrough	truePeakTrough
x	adductSpec-class
