Structstrings-package	Structstrings-package
alphabet,DotBracketString-method	DotBracketString
colnames<-,CompressedSplitDotBracketDataFrameList-method	Structstrings-internals
CompressedSplitDotBracketDataFrameList-class	DotBracketDataFrame
CompressedSplitDotBracketDFrameList-class	DotBracketDataFrame
convertAnnotation	convertAnnotation
convertAnnotation,DotBracketString-method	convertAnnotation
convertAnnotation,DotBracketStringSet-method	convertAnnotation
convertAnnotation,DotBracketStringSetList-method	convertAnnotation
DB	DotBracketString
DBDF	DotBracketDataFrame
DBDFL	DotBracketDataFrame
DBS	DotBracketString
dbs	Structstrings-data
DBSL	DotBracketString
dotbracket	StructuredXStringSet
dotbracket,StructuredXStringSet-method	StructuredXStringSet
dotbracket<-	StructuredXStringSet
dotbracket<-,StructuredXStringSet-method	StructuredXStringSet
DotBracketDataFrame	DotBracketDataFrame
DotBracketDataFrame-class	DotBracketDataFrame
DotBracketDataFrameList	DotBracketDataFrame
DotBracketDataFrameList-class	DotBracketDataFrame
DotBracketDFrame-class	DotBracketDataFrame
DotBracketDFrameList-class	DotBracketDataFrame
DotBracketString	DotBracketString
DotBracketString-class	DotBracketString
DotBracketStringSet	DotBracketString
DotBracketStringSet-class	DotBracketString
DotBracketStringSet-io	DotBracketStringSet-io
DotBracketStringSetList	DotBracketString
DotBracketStringSetList-class	DotBracketString
DOTBRACKET_ALPHABET	Structstrings-internals
DOTBRACKET_CHAR_VALUES	Structstrings-internals
encoding,DotBracketString-method	DotBracketString
getBasePairing	getBasePairing
getBasePairing,DotBracketString-method	getBasePairing
getBasePairing,DotBracketStringSet-method	getBasePairing
getBasePairing,StructuredXStringSet-method	StructuredXStringSet
getDotBracket	getBasePairing
getDotBracket,CompressedSplitDotBracketDataFrameList-method	getBasePairing
getDotBracket,DotBracketDataFrame-method	getBasePairing
getDotBracket,DotBracketDataFrameList-method	getBasePairing
getDotBracket,SimpleSplitDotBracketDataFrameList-method	getBasePairing
getLoopIndices	getBasePairing
getLoopIndices,CompressedSplitDotBracketDataFrameList-method	getBasePairing
getLoopIndices,DotBracketDataFrame-method	getBasePairing
getLoopIndices,DotBracketDataFrameList-method	getBasePairing
getLoopIndices,DotBracketString-method	getBasePairing
getLoopIndices,DotBracketStringSet-method	getBasePairing
getLoopIndices,SimpleSplitDotBracketDataFrameList-method	getBasePairing
getLoopIndices,StructuredXStringSet-method	StructuredXStringSet
LoopIndexList	LoopIndexList
LoopIndexList-class	LoopIndexList
nseq	Structstrings-data
readDotBracketStringSet	DotBracketStringSet-io
readStructuredRNAStringSet	StructuredXStringSet
saveDotBracketStringSet	DotBracketStringSet-io
SDBDFL	DotBracketDataFrame
seqtype,DotBracketString-method	Structstrings-internals
SimpleSplitDotBracketDataFrameList-class	DotBracketDataFrame
SimpleSplitDotBracketDFrameList-class	DotBracketDataFrame
SplitDotBracketDataFrameList	DotBracketDataFrame
Structstrings	Structstrings
Structstrings-data	Structstrings-data
Structstrings-internals	Structstrings-internals
StructuredRNAStringSet	StructuredXStringSet
StructuredRNAStringSet-class	StructuredXStringSet
StructuredXStringSet	StructuredXStringSet
STRUCTURE_CLOSE_CHR	Structstrings-internals
STRUCTURE_NEUTRAL_CHR	Structstrings-internals
STRUCTURE_OPEN_CHR	Structstrings-internals
subseq,DotBracketString-method	Structstrings-internals
subseq<-,DotBracketString-method	Structstrings-internals
subseq<-,DotBracketStringSet-method	Structstrings-internals
writeDotBracketStringSet	DotBracketStringSet-io
writeStructuredXStringSet	StructuredXStringSet
[<-,DotBracketDataFrame-method	Structstrings-internals
