curated_genes           Curated Genes for example purposes
findAllHotspots         Find hotSpots for all spatial patterns
findGenesOfInterest     findGenesOfInterest Identify genes associated
                        with pattern interaction. This function
                        identifies genes exhibiting significantly
                        higher values of testMat in the Interaction
                        region of the two patterns compared to regions
                        with exclusive influence from either pattern.
                        It uses Kruskal-Wallis test followed by posthoc
                        analysis using Dunn's Test to identify the
                        genes.
findPatternHotspots     Identify hotspots of spatial pattern influence
getIMScores             getIMScores
getInteractingGenes     Calculate Interaction Regions and Associated
                        Genes
getOverlapScores        getOverlapScores
getPairwiseInteractingGenes
                        getPairwiseInteractingGenes
getSpatialFeatures      Load spatial features
getSpatialParameters    Read optimal parameters for spatial kernel
                        density from user input or .json file
getSpatialParamsMoransI
                        Calculate the optimal parameters from spatial
                        kernel density for cell-cell interactions
load10XCoords           Load 10x Visium Spatial Coordinates
load10XExpr             Load 10X Visium Expression Data
optParams               Optimal paramters of 5 patterns from CoGAPS.
plotIMScores            plotIMScores
plotOverlapScores       plotOverlapScores
