Site2Target             Associate peaks and target genes
Table2Granges           Take Genomic Ranges from a table file
addColumn2geneWiseAssociation
                        Add column to gene-wise association
addRelation2geneWiseAssociation
                        Add a relation column to gene-peak interaction
                        table
data                    MEIS cardiomyocytes datasets used in the
                        package
extendSitesInGivenRegions
                        Extend sites given regions boundaries
genewiseAssociation     Generate genewise association between genes and
                        peaks
getCenterOfPeaks        Return center of the given granges files
getNameFromCoordinates
                        Get names of genes or peaks related to a query
                        coordinates
getTargetGenesNumber    generate number of sites per gene given
                        distances
getTargetGenesPvals     Fit Negative binomial distribution to target
                        genes
getTargetGenesPvalsWithDNAInteractions
                        Fit Negative binomial distribution to target
                        genes
getTargetGenesPvalsWithIntensities
                        Fit log-normal distribution to target genes
getTargetGenesPvalsWithIntensitiesAndDNAInteractions
                        Fit log-normal distribution to target genes
granges2String          Convert granges to strings of coordinates
removeReserveCharacter
                        Remove reserved characters from a string
site2GeneDistance       Return the distance between paired peaks and
                        genes
string2Granges          Convert strings to granges of coordinates
