| census | Applies the Census count transformation on a count matrix |
| dataset | Build SummarizedExperiment using local annotation and count matrix R objects |
| dataset_h5ad | Build SummarizedExperiment using a h5ad file for the counts |
| dataset_merge | Merge multiple SummarizedExperiment datasets into one |
| dataset_seurat | Build SummarizedExperiment using a Seurat object |
| dataset_sfaira | Build SummarizedExperiment using a single sfaira entry ID |
| dataset_sfaira_multiple | Build SummarizedExperiment using multiple sfaira entries |
| merge_simulations | Combine multiple simulations into one result |
| plot_simulation | Plot the cell-type fractions in your simulated dataset |
| save_simulation | Save the expression matrix of a simulated pseudo-bulk dataset to a file |
| setup_sfaira | setup the sfaira package |
| sfaira_overview | Gives an overview of the possible datasets you can use from the sfaira database |
| SimBu | SimBu: Bias-aware simulation of bulk RNA-seq data with variable cell type composition |
| simulate_bulk | Simulate whole pseudo-bulk RNAseq dataset |