SNPhood-package	SNPhood
analyzeSNPhood	analyzeSNPhood
annotation	annotation-methods
annotation,SNPhood-method	annotation-methods
annotationBins	annotationBins
annotationBins2	annotationBins2
annotationDatasets	annotationDatasets
annotationReadGroups	annotationReadGroups
annotationRegions	annotationRegions
associateGenotypes	associateGenotypes
bins	bins-methods
changeObjectIntegrityChecking	changeObjectIntegrityChecking
collectFiles	collectFiles
convertToAllelicFractions	convertToAllelicFractions
counts	counts-method
counts,SNPhood-method	counts-method
datasets	datasets-methods
deleteDatasets	deleteDatasets
deleteReadGroups	deleteReadGroups
deleteRegions	deleteRegions
enrichment	enrichment-methods
enrichment,SNPhood-method	enrichment-methods
getDefaultParameterList	getDefaultParameterList
mergeReadGroups	mergeReadGroups
nBins	bins-methods
nDatasets	datasets-methods
nReadGroups	readGroups-methods
nRegions	regions-methods
parameters	parameters-methods
parameters,SNPhood-method	parameters-methods
plotAllelicBiasResults	plotAllelicBiasResults
plotAllelicBiasResultsOverview	plotAllelicBiasResultsOverview
plotAndCalculateCorrelationDatasets	plotAndCalculateCorrelationDatasets
plotAndCalculateWeakAndStrongGenotype	plotAndCalculateWeakAndStrongGenotype
plotAndClusterMatrix	plotAndClusterMatrix
plotAndSummarizeAllelicBiasTest	plotAndSummarizeAllelicBiasTest
plotBinCounts	plotBinCounts
plotClusterAverage	plotClusterAverage
plotFDRResults	plotFDRResults
plotGenotypesPerCluster	plotGenotypesPerCluster
plotGenotypesPerSNP	plotGenotypesPerSNP
plotRegionCounts	plotRegionCounts
readGroups	readGroups-methods
regions	regions-methods
renameBins	renameBins
renameDatasets	renameDatasets
renameReadGroups	renameReadGroups
renameRegions	renameRegions
results	results
SNPhood	SNPhood
SNPhood-class	SNPhood-class
SNPhood-data	SNPhood.o
SNPhood.o	SNPhood.o
testForAllelicBiases	testForAllelicBiases
