R4RNA-package	R4RNA-package
alignmentCanonical	alignmentStatistics
alignmentConservation	alignmentStatistics
alignmentCovariation	alignmentStatistics
alignmentPercentGaps	alignmentStatistics
as.helix	as.helix
baseConservation	alignmentStatistics
basepairCanonical	alignmentStatistics
basepairConservation	alignmentStatistics
basepairCovariation	alignmentStatistics
basepairFrequency	basepairFrequency
blankPlot	blankPlot
collapseHelix	expandCollapseHelix
colourByBasepairFrequency	colourHelices
colourByCanonical	colourHelices
colourByConservation	colourHelices
colourByCount	colourHelices
colourByCovariation	colourHelices
colourByUnknottedGroups	colourHelices
colourByValue	colourHelices
defaultPalette	colourHelices
expandHelix	expandCollapseHelix
fasta	helix
helix	helix
helixCanonical	alignmentStatistics
helixConservation	alignmentStatistics
helixCovariation	alignmentStatistics
helixToBpseq	viennaToHelix
helixToConnect	viennaToHelix
helixToVienna	viennaToHelix
is.helix	as.helix
isConflictingHelix	logicalHelix
isDuplicatingHelix	logicalHelix
isOverlappingHelix	logicalHelix
known	helix
logceiling	logseq
logfloor	logseq
logseq	logseq
maxHeight	blankPlot
parseBracket	as.helix
plotArc	plotHelix
plotArcs	plotHelix
plotCovariance	plotCovariance
plotDoubleCovariance	plotCovariance
plotDoubleHelix	plotHelix
plotHelix	plotHelix
plotOverlapCovariance	plotCovariance
plotOverlapHelix	plotHelix
R4RNA	R4RNA-package
readBpseq	readStructure
readConnect	readStructure
readHelix	readStructure
readVienna	readStructure
structureMismatchScore	structureMismatchScore
unknottedGroups	unknottedGroups
viennaToHelix	viennaToHelix
writeHelix	writeHelix
