# Generated by roxygen2: do not edit by hand

export(checkNetEntropy)
export(checkScaleFreeModel)
export(dfToDistance)
export(dfToProjection)
export(jaccardMatrix)
export(makeTDAobj)
export(mapperCore)
export(tdaDfEnrichment)
export(makeTDAobjFromSE)
export(plot_projection_plot)
export(scaleData_01)
export(jaccard)
export(plot_ScaleFreeLaw)
exportClasses(TDAobj)
importFrom("grDevices", "rainbow")
importFrom("stats", "approx")
importFrom("stats", "as.dist")
importFrom("stats", "cmdscale")
importFrom("stats", "cor")
importFrom("stats", "cutree")
importFrom("stats", "dist")
importFrom("stats", "hclust")
importFrom("stats","kmeans")
importFrom("stats","prcomp")
importFrom("umap","umap.defaults")
importFrom("umap","umap")
importFrom("ggplot2","aes")
importFrom("ggplot2","annotation_logticks")
importFrom("ggplot2","element_text")
importFrom("ggplot2","geom_line")
importFrom("ggplot2","geom_point")
importFrom("ggplot2","ggplot")
importFrom("ggplot2","ggtitle")
importFrom("ggplot2","labs")
importFrom("ggplot2","scale_color_manual")
importFrom("ggplot2","scale_fill_gradientn")
importFrom("ggplot2","scale_fill_manual")
importFrom("ggplot2","scale_x_log10")
importFrom("ggplot2","scale_y_log10")
importFrom("ggplot2","theme")
importFrom("ggplot2","theme_bw")
importFrom("igraph","average.path.length")
importFrom("igraph","degree")
importFrom("igraph","degree_distribution")
importFrom("igraph","gorder")
importFrom("igraph","graph_from_adjacency_matrix")
importFrom("igraph","transitivity")
importFrom("igraph","fit_power_law")
importFrom("cluster","daisy")
importFrom("dbscan","dbscan")
importFrom("dbscan","extractDBSCAN")
importFrom("dbscan","kNNdist")
importFrom("dbscan","optics")
importFrom("vegan","isomap")
importFrom("kernlab","kpca")
importFrom("scales","math_format")
importFrom("scales","trans_breaks")
importFrom("scales","trans_format")
importFrom("scales","pretty_breaks") 
importFrom("Hmisc","rcorr")
importFrom("tsne","tsne")
importFrom("patchwork","wrap_plots")
importFrom("methods", "new")
importFrom("methods", "is")
importFrom("methods", "show")
importFrom("stats", "complete.cases")
importFrom("SummarizedExperiment","SummarizedExperiment")
exportMethods(getOrigData)
exportMethods(setOrigData)
exportMethods(getScaledData)
exportMethods(setScaledData)
exportMethods(getOutcomeFact)
exportMethods(setOutcomeFact)
exportMethods(getOutcome)
exportMethods(setOutcome)
exportMethods(getComp)
exportMethods(setComp)
exportMethods(getDistMat)
exportMethods(setDistMat)
exportMethods(getDfMapper)
exportMethods(setDfMapper)
exportMethods(getJacc)
exportMethods(setJacc)
exportMethods(getNodeDataMat)
exportMethods(setNodeDataMat)
