DEGsmatrix              DEG Differentially expressed genes
DPA                     DPA
DiseaseList             Information on 101 biological processes
EAGenes                 Information about genes
FEA                     FEA
GDCprojects             Information on GDC projects
GEO_TCGAtab             Information on GEO data (and overlap with
                        TCGA)#' A data set containing the following
                        data:
GRN                     Generate network
GSEA                    GSEA
LPA                     LPA
MoonlightR              MoonlightR
PRA                     Pattern Recognition Analysis (PRA)
URA                     URA Upstream Regulator Analysis
dataFilt                Gene Expression (Rnaseqv2) data from TCGA LUAD
dataGRN                 GRN gene regulatory network output
dataURA                 Output example from function Upstram Regulator
                        Analysis
geneInfo                Information about genes for normalization
getDataGEO              getDataGEO
getDataTCGA             getDataTCGA
knownDriverGenes        Information on known cancer driver gene from
                        COSMIC
listMoonlight           Output list from Moonlight
moonlight               moonlight pipeline
plotCircos              plotCircos
plotFEA                 plotFEA
plotNetworkHive         plotNetworkHive: Hive network plot
plotURA                 plotURA: Upstream regulatory analysis heatmap
                        plot
tabGrowBlock            Information growing/blocking characteristics
                        for 101 selected biological processes
