# Generated by roxygen2: do not edit by hand

export(MpraObject)
export(analyzeComparative)
export(analyzeQuantification)
export(estimateDepthFactors)
export(getAlpha)
export(getDistrParam_DNA)
export(getDistrParam_RNA)
export(getFits_DNA)
export(getFits_RNA)
export(getModelParameters_DNA)
export(getModelParameters_RNA)
export(setDepthFactors)
export(setModel)
export(simulateMPRA)
export(testCoefficient)
export(testEmpirical)
export(testLrt)
exportMethods(MpraObject)
exportMethods(controls)
exportMethods(dnaAnnot)
exportMethods(dnaCounts)
exportMethods(dnaDepth)
exportMethods(model)
exportMethods(rnaAnnot)
exportMethods(rnaCounts)
exportMethods(rnaDepth)
exportMethods(rowAnnot)
import(BiocParallel)
import(methods)
import(progress)
import(stats)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
