MapfxFFC                Normalising data from the Fluorescence Flow
                        Cytometry (FFC) Experiments with mapfx.norm
MapfxMPC                MAssively Parallel Flow cytometry Xplorer
                        (MAPFX)
bkc_bkb                 Background correction for the backbone markers
bkc_pe                  Background correction for the well-specific
                        markers (PE)
cluster.analysis        Cluster analysis with normalised backbone
                        measurements and the complete dataset
cluster.analysis.bkbOnly
                        Cluster analysis with normalised backbone
                        measurements
fcs_to_rds              Converting FCS files to RDS files
fcs_to_rds_bkb          Converting FCS files to RDS files (for the case
                        without exploratory markers)
imputation_bkb.predictors
                        Imputing the unmeasured well-specific markers
                        with regression models
initM                   Initial biological clusters
mkImputeMT              Making the input for imputation
ord.fcs.raw.meta.df.out_ffc
                        Metadata of the example MPC data
ord.fcs.raw.meta.df.out_mpc
                        Metadata of the example FFC data
ord.fcs.raw.mt_ffc      Subset of the single-cell murine lung data at
                        steady state from an MPC experiment
ord.fcs.raw.mt_mpc      Subset of the sorted CD4+ and CD8+ T cells from
                        mice splenocytes from an FFC experiment
rmBatchEffect           Removing batch effect from the data (FFC)
rmWellEffect            Removing well effect from the data
