bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
d5565cc0b9d859500d13ee9989b601f8 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
5a36cad4a78db3be373f11ede85a9523 *Meta/Rd.rds
97f39cfa069205fc947ab1e51ea53d4e *Meta/features.rds
dc4329dc2f8d25d5d2e028e446ea9702 *Meta/hsearch.rds
62782a678b095cb1eacc859b6d590d2c *Meta/links.rds
799a677c7b12a97bbf6e33e524e2869c *Meta/nsInfo.rds
1ef2b4d0c41389177b7f13a4550b05c3 *Meta/package.rds
e77be4f1f6cfab52f0664107cd8b9712 *Meta/vignette.rds
07f100b9a72899590b3704240f797feb *NAMESPACE
306e9d00a9336f77705552752b8873ce *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
7990682b079f16e5b28da68a274782ce *R/GenomicAlignments.rdb
812b2895f778c84a374ade416c1c7c88 *R/GenomicAlignments.rdx
87c1aee70a53b2832ae0a7b1d1ea22d0 *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
8708fb530b42737ebb5b79e29408d6cc *doc/GenomicAlignmentsIntroduction.pdf
0d307bd84b97e9958f7d683066cc6792 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
51e7167a1b9521910f4738b5b1a5fbd0 *doc/OverlapEncodings.pdf
76d44b12d4e91049c76dcf01a679d491 *doc/WorkingWithAlignedNucleotides.R
5e284095ceea6b18ee2bb1a59c19b8f4 *doc/WorkingWithAlignedNucleotides.Rmd
b188588a35942316e301b0b94b22fffa *doc/WorkingWithAlignedNucleotides.html
4e9aa87cfa1f5a99d9b92bfb8875df79 *doc/index.html
70423f482a1b06ce754e2eb2378abd79 *doc/summarizeOverlaps.R
8d6114b1245e4f25b7db01f3ff3111f5 *doc/summarizeOverlaps.Rnw
490274afcc4282a1a5ccbb998cfccc37 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
7e5eb01a4fbeeeaedd79122a4374e1e7 *help/AnIndex
1d4146fc1eb10918f1a26cfc05517a6c *help/GenomicAlignments.rdb
614822891ca337b0866cb914b7c9eb29 *help/GenomicAlignments.rdx
290f0cc550a03ca77a092c23608a1fa2 *help/aliases.rds
c89afdb348722b983f47b8cd0274ea5e *help/paths.rds
204e09938995fca65a8e4730d35ff875 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
5e70d02548afdaa078bf13f27e5885b8 *libs/x64/GenomicAlignments.dll
a7b36b6b3e11006f2eb35e0c74d36328 *unitTests/test_GAlignments-class.R
154347216f4ba7be01f4202c3981634e *unitTests/test_GAlignmentsList-class.R
8ebc949e316f84ed21c18fdf971de87f *unitTests/test_cigar-utils.R
201ee65c7ea0579dfba6112e0d2d33d9 *unitTests/test_coordinate-mapping-methods.R
6423ceb23b9aa2509a64f02c53ff9f57 *unitTests/test_findSpliceOverlaps-methods.R
50ce35ec47c6be35b91c2cc63b9fdbaa *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
9610e31d42cdcec687fb5f4fb264b906 *unitTests/test_readGAlignmentsList.R
fff74f636e12162e8d287c1ff1537716 *unitTests/test_summarizeOverlaps-methods.R
