GeneOverlap-class       Test overlap between two gene lists using
                        Fisher's exact test.
GeneOverlap-package     Test and visualize overlaps between gene lists
GeneOverlapMatrix-class
                        Matrix representation of the pairwise overlaps
                        between two gene sets
drawHeatmap             Visualize GeneOverlapMatrix objects as heatmaps
getGenomeSize           Accessors for the "genome.size" slot of the
                        GeneOverlap class
getGsetA                Read-only accessors for the various slots of
                        the GeneOverlapMatrix class
getIntersection         Read-only accessors for the "intersection",
                        "union", "is.tested", "cont.tbl", "pval",
                        "odds.ratio", "Jaccard" slots of the
                        GeneOverlap class
getListA                Accessors for the "listA" and "listB" slots of
                        GeneOverlap class
gs.RNASeq               Genome size based on RNA-seq data
hESC.ChIPSeq.list       ChIP-seq gene lists
hESC.RNASeq.list        RNA-seq gene lists
newGOM                  Constructor for the GeneOverlapMatrix class
newGeneOverlap          Constructor for the GeneOverlap class
testGeneOverlap         Test function for the GeneOverlap class
