# Generated by roxygen2: do not edit by hand

export("BICscores<-")
export("networkGroupIDs<-")
export("optimizedLambda<-")
export(BICscores)
export(BICtune)
export(CCsummary)
export(addExpressionData)
export(adjacencyGraph)
export(aggregateFeatures)
export(clusterNet)
export(createDNEAobject)
export(edgeList)
export(expressionData)
export(featureNames)
export(filterNetworks)
export(getNetworkFiles)
export(getNetworks)
export(includeMetadata)
export(lambdas2Test)
export(massDataset2DNEA)
export(metaData)
export(netGSAresults)
export(networkGroupIDs)
export(networkGroups)
export(nodeList)
export(numFeatures)
export(numSamples)
export(optimizedLambda)
export(plotNetworks)
export(projectName)
export(runNetGSA)
export(sampleNames)
export(stabilitySelection)
export(subnetworkMembership)
export(sumExp2DNEA)
exportMethods("optimizedLambda<-")
exportMethods(BICscores)
exportMethods(BICtune)
exportMethods(CCsummary)
exportMethods(adjacencyGraph)
exportMethods(adjacencyMatrix)
exportMethods(datasetSummary)
exportMethods(diagnostics)
exportMethods(edgeList)
exportMethods(expressionData)
exportMethods(featureNames)
exportMethods(filterNetworks)
exportMethods(lambdas2Test)
exportMethods(metaData)
exportMethods(netGSAresults)
exportMethods(networkGroupIDs)
exportMethods(networkGroups)
exportMethods(nodeList)
exportMethods(numFeatures)
exportMethods(numSamples)
exportMethods(optimizedLambda)
exportMethods(projectName)
exportMethods(sampleNames)
exportMethods(selectionProbabilities)
exportMethods(selectionResults)
exportMethods(show)
exportMethods(subnetworkMembership)
import(glasso)
import(igraph)
import(methods)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpoptions)
importFrom(BiocParallel,bpparam)
importFrom(BiocParallel,bptasks)
importFrom(Matrix,Matrix)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(dplyr,"%>%")
importFrom(dplyr,across)
importFrom(dplyr,everything)
importFrom(dplyr,group_by)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(gdata,lowerTriangle)
importFrom(janitor,make_clean_names)
importFrom(netgsa,NetGSA)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,cov2cor)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,p.adjust)
importFrom(stats,quantile)
importFrom(stats,t.test)
importFrom(stringr,str_detect)
importFrom(utils,combn)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
