BLOSUM62                BLOSUM62 matrix
CDR3ab                  Datasets 'CDR3ab' and 'D1' with TCRalphabeta
                        mock repertoires
clust_irr-class         clust_irr class
clustirr                Clustering of immune receptor repertoires
                        (IRRs)
dco                     Model-based differential community occupancy
                        (DCO) analysis
decode_communities      Decode graph communities
detect_communities      Graph-based community detection (GCD)
get_ag_summary          Estimate the number of antigen-specific T-cells
                        in selected communities
get_beta_scatterplot    Compare community betas between pairs of
                        repertoires
get_beta_violins        Visualize distribution of beta means in each
                        repertoire as violin plots
get_honeycombs          Generate honycomb plot: visualize community
                        occupancy of pairs of immune receptor
                        repertoires
mcpas                   CDR3 sequences and their matching epitopes
                        obtained from McPAS-TCR
plot_graph              Plot ClustIRR graph
tcr3d                   CDR3 sequences and their matching epitopes
                        obtained from TCR3d
vdjdb                   CDR3 sequences and their matching epitopes
                        obtained from VDJdb
