# Generated by roxygen2: do not edit by hand

export(BaalChIP)
exportMethods(BaalChIP.get)
exportMethods(BaalChIP.report)
exportMethods(BaalChIP.run)
exportMethods(QCfilter)
exportMethods(adjustmentBaalPlot)
exportMethods(alleleCounts)
exportMethods(filter1allele)
exportMethods(filterIntbias)
exportMethods(getASB)
exportMethods(mergePerGroup)
exportMethods(plotQC)
exportMethods(plotSimul)
exportMethods(summaryASB)
exportMethods(summaryQC)
import(GenomicAlignments)
import(GenomicRanges)
import(IRanges)
import(Rsamtools)
import(foreach)
import(ggplot2)
import(methods)
importFrom(GenomeInfoDb,mapSeqlevels)
importFrom(GenomeInfoDb,renameSeqlevels)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(coda,HPDinterval)
importFrom(coda,as.mcmc)
importFrom(doBy,summaryBy)
importFrom(doParallel,registerDoParallel)
importFrom(graphics,plot)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(reshape2,melt)
importFrom(scales,alpha)
importFrom(stats,dbeta)
importFrom(stats,na.omit)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(utils,data)
importFrom(utils,read.delim)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)
